public class Holder extends Debugger implements java.lang.Cloneable, java.io.Serializable
Constructor and Description |
---|
Holder(IMappingAlgorithm theory,
java.lang.String reactionID,
java.util.List<java.lang.String> eductCounter,
java.util.List<java.lang.String> productCounter,
ReactionContainer reactionContainer,
BestMatch bestMatchContainer,
HydrogenFreeFingerPrintContainer hydFPFree) |
Holder(int row,
int coloumn) |
Modifier and Type | Method and Description |
---|---|
java.lang.Object |
clone()
Cloned EBIMatrix Objects
|
BestMatch |
getBestMatchContainer() |
EBIMatrix |
getCliqueMatrix() |
EBIMatrix |
getEnergyMatrix() |
EBIMatrix |
getFPSimilarityMatrix() |
EBIMatrix |
getFragmentMatrix() |
EBIMatrix |
getGraphSimilarityMatrix() |
java.util.List<MolMapping> |
getMappingMolPair() |
ReactionContainer |
getReactionContainer() |
EBIMatrix |
getStereoMatrix() |
IMappingAlgorithm |
getTheory() |
void |
setTheory(IMappingAlgorithm theory) |
generateImage, printCliqueMatrix, printEnergyMatrix, printFlagMatrix, printFragmentMatrix, printGraphMatching, printMatrixAtomContainer, printSimMatrix, printSMILES, printStereoMatrix
printAtomAtomMapping, printAtoms, printMolecule, printReaction
public Holder(IMappingAlgorithm theory, java.lang.String reactionID, java.util.List<java.lang.String> eductCounter, java.util.List<java.lang.String> productCounter, ReactionContainer reactionContainer, BestMatch bestMatchContainer, HydrogenFreeFingerPrintContainer hydFPFree) throws java.io.IOException
theory
- reactionID
- eductCounter
- productCounter
- reactionContainer
- bestMatchContainer
- hydFPFree
- java.io.IOException
public Holder(int row, int coloumn)
row
- coloumn
- public EBIMatrix getStereoMatrix()
public EBIMatrix getCliqueMatrix()
public EBIMatrix getGraphSimilarityMatrix()
public EBIMatrix getFragmentMatrix()
public EBIMatrix getEnergyMatrix()
public EBIMatrix getFPSimilarityMatrix()
public ReactionContainer getReactionContainer()
public java.util.List<MolMapping> getMappingMolPair()
public java.lang.Object clone() throws java.lang.CloneNotSupportedException
clone
in class java.lang.Object
java.lang.CloneNotSupportedException
public BestMatch getBestMatchContainer()
public IMappingAlgorithm getTheory()
public void setTheory(IMappingAlgorithm theory)
theory
- the theory to set