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H

HanserRingFinder - Class in org.openscience.smsd.ring
Finds the Set of all Rings.
hasClique(Map<Integer, Integer>, List<Map<Integer, Integer>>) - Method in class org.openscience.smsd.algorithm.vflib.BaseMCS
 
hasFeature(IFeature) - Method in interface uk.ac.ebi.reactionblast.fingerprints.interfaces.IPatternFingerprinter
 
hasFeature(IFeature) - Method in class uk.ac.ebi.reactionblast.fingerprints.PatternFingerprinter
 
hashCode() - Method in class org.openscience.smsd.algorithm.mcsplus.Edge
 
hashCode() - Method in class org.openscience.smsd.algorithm.vflib.builder.NodeBuilder
 
hashCode() - Method in class org.openscience.smsd.algorithm.vflib.map.Match
 
hashCode() - Method in class org.openscience.smsd.AtomAtomMapping
 
hashCode() - Method in class org.openscience.smsd.mcss.Fragment
 
hashCode() - Method in class uk.ac.ebi.reactionblast.fingerprints.Feature
 
hashCode() - Method in interface uk.ac.ebi.reactionblast.fingerprints.interfaces.IFeature
Hash code for Pattern
hashCode() - Method in interface uk.ac.ebi.reactionblast.fingerprints.interfaces.IPatternFingerprinter
 
hashCode() - Method in class uk.ac.ebi.reactionblast.fingerprints.MolFingerprint
 
hashCode() - Method in class uk.ac.ebi.reactionblast.fingerprints.PatternFingerprinter
 
hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.blocks.BlockList
 
hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.blocks.DefinedMapping
 
hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.container.helper.Key
 
hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.container.helper.MolMapping
 
hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.graph.Combination
 
hashCode() - Method in interface uk.ac.ebi.reactionblast.mapping.interfaces.IKey
 
hashCode() - Method in class uk.ac.ebi.reactionblast.mechanism.helper.MoleculeMoleculePair
 
hashCode() - Method in class uk.ac.ebi.reactionblast.mechanism.helper.ReactantProductPair
 
hasMap(IAtomContainer) - Method in interface org.openscience.smsd.algorithm.vflib.interfaces.IMapper
checks if a map exits for a molecule.
hasMap(IAtomContainer) - Method in class org.openscience.smsd.algorithm.vflib.map.VFMapper
checks if a map exits for a molecule.
hasMap(IAtomContainer) - Method in class org.openscience.smsd.algorithm.vflib.map.VFMCSMapper
checks if a map exits for a molecule.
hasNext() - Method in class uk.ac.ebi.reactionblast.tools.labelling.Permutor
 
hasNextCandidate() - Method in interface org.openscience.smsd.algorithm.vflib.interfaces.IState
Returns true if another candidate match can be found or false otherwise.
hasNextCandidate() - Method in class org.openscience.smsd.algorithm.vflib.map.VFMCSState
Returns true if another candidate match can be found or false otherwise.
hasNextCandidate() - Method in class org.openscience.smsd.algorithm.vflib.map.VFState
Returns true if another candidate match can be found or false otherwise.
hasPotentialStereoCenter(IAtom, IAtomContainer) - Static method in class uk.ac.ebi.reactionblast.stereo.compare.StereoCenterAnalyser
Check an atom to see if it has a potential tetrahedral stereo center.
hasRMatrix() - Method in class uk.ac.ebi.reactionblast.mechanism.BondChangeAnnotator
 
hasRMatrix() - Method in class uk.ac.ebi.reactionblast.mechanism.BondChangeCalculator
 
hasRMatrix() - Method in interface uk.ac.ebi.reactionblast.mechanism.interfaces.IChangeCalculator
 
highlightAlpha - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
 
highlightBondStroke - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
 
highlightColor - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
 
Highlighter - Interface in uk.ac.ebi.reactionblast.graphics.direct
 
highlightRadius - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
 
highlightsAbove - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
 
highlightsBelow - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
 
highlightSubgraph(List<IAtom>, Color) - Method in class uk.ac.ebi.reactionblast.graphics.direct.DirectReactionDrawer
 
highlightSubgraphs(RBlastReaction) - Method in class uk.ac.ebi.reactionblast.graphics.direct.DirectRBLastReactionDrawer
 
highlightSubgraphs - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
 
Holder - Class in uk.ac.ebi.reactionblast.mapping.algorithm
 
Holder(IMappingAlgorithm, String, List<String>, List<String>, ReactionContainer, BestMatch, HydrogenFreeFingerPrintContainer) - Constructor for class uk.ac.ebi.reactionblast.mapping.algorithm.Holder
 
Holder(int, int) - Constructor for class uk.ac.ebi.reactionblast.mapping.algorithm.Holder
 
HydrogenFreeFingerPrintContainer - Class in uk.ac.ebi.reactionblast.mapping.container
 
HydrogenFreeFingerPrintContainer() - Constructor for class uk.ac.ebi.reactionblast.mapping.container.HydrogenFreeFingerPrintContainer
HydrogenFreeFingerPrintContainer container
hypot(Double, Double) - Static method in class uk.ac.ebi.reactionblast.tools.matrix.Maths
sqrt(a^2 + b^2) without under/overflow.
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