protected void |
Annotator.annotateReactionAsText(ReactionMechanismTool rmt,
java.lang.String reactionID,
java.lang.StringBuilder sb) |
protected void |
Annotator.annotateReactionAsXML(ReactionMechanismTool rmt,
java.lang.String reactionID,
org.w3c.dom.Document doc,
org.w3c.dom.Element rootElement) |
protected void |
Annotator.compareRXNText(ReactionMechanismTool annotateRXNQ,
java.lang.String reactionQID,
ReactionMechanismTool annotateRXNT,
java.lang.String reactionTID,
java.lang.StringBuilder sb) |
protected void |
Annotator.compareRXNXML(ReactionMechanismTool annotateRXNQ,
java.lang.String reactionQID,
ReactionMechanismTool annotateRXNT,
java.lang.String reactionTID,
org.w3c.dom.Document doc,
org.w3c.dom.Element rootElement) |
protected java.util.Map<java.lang.String,java.lang.String> |
Annotator.similarityReactions(ReactionMechanismTool annotateRXNQ,
java.lang.String reactionQID,
ReactionMechanismTool annotateRXNT,
java.lang.String reactionTID) |
protected boolean |
Annotator.writeFiles(java.lang.String reactionID,
ReactionMechanismTool mech) |