Modifier and Type | Method and Description |
---|---|
Holder |
GameTheoryMatrix.getMatrixHolder() |
Modifier and Type | Method and Description |
---|---|
void |
BaseGameTheory.UpdateMatrix(java.util.Collection<MCSSolution> mcsSolutions,
Holder mh,
boolean removeHydrogen) |
void |
BaseGameTheory.UpdateMatrix(Holder mh,
boolean removeHydrogen) |
Modifier and Type | Method and Description |
---|---|
Holder |
ReactionIsomorphismHandler.getMatrixHolder() |
Holder |
RuleBasedMappingHandler.getMatrixHolder() |
Holder |
IsomorphismMax.getUpdatedHolder() |
Holder |
IsomorphismMin.getUpdatedHolder() |
static Holder |
Selector.modifyMatrix(Holder orignal)
Refills Matrix with true similarity scores
|
Modifier and Type | Method and Description |
---|---|
protected boolean |
Selector.isMajorSubgraphColumn(Holder mh,
int IndexI,
int IndexJ) |
protected boolean |
Selector.isMajorSubgraphRow(Holder mh,
int IndexI,
int IndexJ) |
protected boolean |
Selector.isMinEnergyColumn(Holder mh,
int IndexI,
int IndexJ) |
protected boolean |
Selector.isMinEnergyRow(Holder mh,
int IndexI,
int IndexJ) |
protected boolean |
Selector.isMinorSubgraphColumn(Holder mh,
int IndexI,
int IndexJ) |
protected boolean |
Selector.isMinorSubgraphRow(Holder mh,
int IndexI,
int IndexJ) |
static Holder |
Selector.modifyMatrix(Holder orignal)
Refills Matrix with true similarity scores
|
void |
ChooseWinner.searchWinners(java.util.Map<java.lang.Integer,org.openscience.cdk.interfaces.IAtomContainer> eductMap,
java.util.Map<java.lang.Integer,org.openscience.cdk.interfaces.IAtomContainer> productMap,
Holder mHolder) |
void |
ReactionIsomorphismHandler.setMatrixHolder(Holder matrixHolder) |
Constructor and Description |
---|
IsomorphismMax(Holder mHolder,
java.util.List<java.lang.String> EdMapOrignal,
java.util.List<java.lang.String> PdMapOrignal) |
IsomorphismMin(Holder mHolder,
java.util.List<java.lang.String> EdMapOrignal,
java.util.List<java.lang.String> PdMapOrignal) |
ReactionIsomorphismHandler(Holder mHolder,
java.util.List<java.lang.String> EdMapOrignal,
java.util.List<java.lang.String> PdMapOrignal) |
RuleBasedMappingHandler(Holder matrixHolder,
java.util.List<java.lang.String> EdMapOrignal,
java.util.List<java.lang.String> PdMapOrignal) |
Modifier and Type | Method and Description |
---|---|
static java.util.Collection<MCSSolution> |
GraphMatcher.matcher(Holder mh) |
boolean |
GraphMatching.mcsMatch(Holder holder,
boolean removeHydrogen,
java.lang.Integer substrateIndex,
java.lang.Integer productIndex,
java.util.BitSet eductFP,
java.util.BitSet prodFP) |
Modifier and Type | Method and Description |
---|---|
protected void |
Debugger.printCliqueMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap)
Prints Clique Matrix
|
protected void |
Debugger.printEnergyMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap) |
protected void |
Debugger.printFragmentMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap) |
protected void |
Debugger.printMatrixAtomContainer(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap)
Prints reactant and product atom container in the matrix
|
protected void |
Debugger.printSimMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap)
Prints Similarity Matrix
|
protected void |
Debugger.printSMILES(Holder mh,
int substrateIndex,
int productIndex) |
protected void |
Debugger.printStereoMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap) |
Modifier and Type | Method and Description |
---|---|
Holder |
IGraphTheoryMatrix.getMatrixHolder() |
Holder |
IResult.getUpdatedHolder() |
Modifier and Type | Method and Description |
---|---|
abstract boolean |
IGraphMatching.mcsMatch(Holder holder,
boolean removeHydrogen,
java.lang.Integer I,
java.lang.Integer J,
java.util.BitSet eductFP,
java.util.BitSet prodFP) |
static void |
IGraphMatching.setMCSUpdationFlags(Holder holder,
int substrateIndex,
int productIndex) |
void |
IGameTheory.UpdateMatrix(java.util.Collection<MCSSolution> mcsSolutions,
Holder mh,
boolean removeHydrogen) |
void |
IGameTheory.UpdateMatrix(Holder mh,
boolean removeHydrogen) |