- ValencyCalculator - Class in uk.ac.ebi.reactionblast.tools
-
- valueInAscendingOrder(Map<Object, Double>) - Static method in class uk.ac.ebi.reactionblast.tools.utility.SortMap
-
- valueInDescendingOrder(Map<Object, Double>) - Static method in class uk.ac.ebi.reactionblast.tools.utility.SortMap
-
- valueOf(String) - Static method in enum org.openscience.smsd.algorithm.vflib.SortOrder
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.openscience.smsd.interfaces.Algorithm
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.openscience.smsd.mcss.JobType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.centres.descriptor.General
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.centres.descriptor.Planar
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.centres.descriptor.Tetrahedral
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.centres.descriptor.Trigonal
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.centres.Descriptor.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.centres.PriorityRule.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Axis
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.LabelManager.AnnotationPosition
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.ArrowType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.BondStrokeCap
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.BondStrokeJoin
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.MoleculeAlignMethod
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.XAlign
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.YAlign
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.interfaces.ITransformation.TargetType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.mapping.interfaces.IMappingAlgorithm
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.mechanism.interfaces.ECBLAST_BOND_CHANGE_FLAGS
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.mechanism.interfaces.ECBLAST_FLAGS
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.mechanism.interfaces.EnumBondTypeChange
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.mechanism.interfaces.EnumSubstrateProduct
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.stereo.inchi.InchiStereoAndConformation
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.stereo.IStereoAndConformation
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.stereo.wedge.WedgeStereoAnalysisResult
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum uk.ac.ebi.reactionblast.tools.rxnfile.MDLV2000Writer.SPIN_MULTIPLICITY
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum org.openscience.smsd.algorithm.vflib.SortOrder
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.openscience.smsd.interfaces.Algorithm
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.openscience.smsd.mcss.JobType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.centres.descriptor.General
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.centres.descriptor.Planar
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.centres.descriptor.Tetrahedral
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.centres.descriptor.Trigonal
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.centres.Descriptor.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.centres.PriorityRule.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Method in class uk.ac.ebi.reactionblast.containers.ReactionDBContainer
-
- values() - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Axis
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.LabelManager.AnnotationPosition
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.ArrowType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.BondStrokeCap
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.BondStrokeJoin
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.MoleculeAlignMethod
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.XAlign
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.graphics.direct.Params.YAlign
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.interfaces.ITransformation.TargetType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.mapping.interfaces.IMappingAlgorithm
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.mechanism.interfaces.ECBLAST_BOND_CHANGE_FLAGS
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.mechanism.interfaces.ECBLAST_FLAGS
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.mechanism.interfaces.EnumBondTypeChange
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.mechanism.interfaces.EnumSubstrateProduct
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.stereo.inchi.InchiStereoAndConformation
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.stereo.IStereoAndConformation
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.stereo.wedge.WedgeStereoAnalysisResult
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum uk.ac.ebi.reactionblast.tools.rxnfile.MDLV2000Writer.SPIN_MULTIPLICITY
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- vertices - Variable in class uk.ac.ebi.reactionblast.mapping.blocks.MappingGraph
-
- VF2 - Class in org.openscience.smsd.algorithm.vflib.substructure
-
This class finds mapping states between query and target molecules.
- VF2(IAtomContainer, IAtomContainer, boolean, boolean, boolean) - Constructor for class org.openscience.smsd.algorithm.vflib.substructure.VF2
-
Constructor for an extended VF Algorithm for the MCS search
- VF2(IQueryAtomContainer, IAtomContainer) - Constructor for class org.openscience.smsd.algorithm.vflib.substructure.VF2
-
Constructor for an extended VF Algorithm for the MCS search
- VF2MCS - Class in org.openscience.smsd.algorithm.vflib
-
This class should be used to find MCS between source graph and target graph.
- VF2MCS(IAtomContainer, IAtomContainer, boolean, boolean, boolean) - Constructor for class org.openscience.smsd.algorithm.vflib.VF2MCS
-
Constructor for an extended VF Algorithm for the MCS search
- VF2MCS(IQueryAtomContainer, IAtomContainer) - Constructor for class org.openscience.smsd.algorithm.vflib.VF2MCS
-
Constructor for an extended VF Algorithm for the MCS search
- VF2MCS(IQueryAtomContainer, IQueryAtomContainer) - Constructor for class org.openscience.smsd.algorithm.vflib.VF2MCS
-
Constructor for an extended VF Algorithm for the MCS search
- VF2Sub - Class in org.openscience.smsd.algorithm.vflib
-
This class should be used to find MCS between source graph and target graph.
- VF2Sub(IAtomContainer, IAtomContainer, boolean, boolean, boolean) - Constructor for class org.openscience.smsd.algorithm.vflib.VF2Sub
-
Constructor for an extended VF Algorithm for the MCS search
- VF2Sub(IQueryAtomContainer, IAtomContainer) - Constructor for class org.openscience.smsd.algorithm.vflib.VF2Sub
-
Constructor for an extended VF Algorithm for the MCS search
- vfLibSolutions - Variable in class org.openscience.smsd.algorithm.vflib.BaseMCS
-
- VFMapper - Class in org.openscience.smsd.algorithm.vflib.map
-
This class finds MCS between query and target molecules using VF2 algorithm.
- VFMapper(IQuery) - Constructor for class org.openscience.smsd.algorithm.vflib.map.VFMapper
-
- VFMapper(IAtomContainer, boolean, boolean, boolean) - Constructor for class org.openscience.smsd.algorithm.vflib.map.VFMapper
-
- VFMCSMapper - Class in org.openscience.smsd.algorithm.vflib.map
-
This class finds MCS between query and target molecules using VF2 algorithm.
- VFMCSMapper(IQuery) - Constructor for class org.openscience.smsd.algorithm.vflib.map.VFMCSMapper
-
- VFMCSMapper(IAtomContainer, boolean, boolean, boolean) - Constructor for class org.openscience.smsd.algorithm.vflib.map.VFMCSMapper
-
- VFMCSState - Class in org.openscience.smsd.algorithm.vflib.map
-
This class finds mapping states between query and target molecules.
- VFMCSState(IQuery, IAtomContainer) - Constructor for class org.openscience.smsd.algorithm.vflib.map.VFMCSState
-
initialize the VFState with query and target
- VFQueryBuilder - Class in org.openscience.smsd.algorithm.vflib.builder
-
Class for parsing and generating query graph.
- VFQueryBuilder() - Constructor for class org.openscience.smsd.algorithm.vflib.builder.VFQueryBuilder
-
Constructor for VF Query Builder
- VFState - Class in org.openscience.smsd.algorithm.vflib.map
-
This class finds mapping states between query and target molecules.
- VFState(IQuery, IAtomContainer) - Constructor for class org.openscience.smsd.algorithm.vflib.map.VFState
-
initialize the VFState with query and target