- LabelContainer - Class in org.openscience.smsd.helper
-
Class that handles atoms and assigns an integer label to them.
- LabelContainer() - Constructor for class org.openscience.smsd.helper.LabelContainer
-
- labelGap - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- LabelManager - Class in uk.ac.ebi.reactionblast.graphics.direct
-
- LabelManager() - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.LabelManager
-
- LabelManager.AnnotationPosition - Enum in uk.ac.ebi.reactionblast.graphics.direct
-
- labelPanelFont - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- labelPanelFontSize - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- labelPanelHeight - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- labelReaction(IReaction, ICanonicalMoleculeLabeller) - Method in class uk.ac.ebi.reactionblast.tools.labelling.AbstractReactionLabeller
-
- labelYGap - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- layout(T, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.AbstractAWTLayout
-
- layout(T, String, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.AbstractAWTLayout
-
- layout(IAtom, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.AtomLayout
-
- layout(IAtom, String, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.AtomLayout
-
- layout(IReaction, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.LeftToRightAWTReactionLayout
-
- layout(IReaction, String, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.LeftToRightAWTReactionLayout
-
- layout(IAtomContainerSet, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.LinearAtomContainerSetLayout
-
- layout(IAtomContainerSet, String, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.LinearAtomContainerSetLayout
-
- layout(IAtomContainer, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.MoleculeLayout
-
- layout(IAtomContainer, String, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.MoleculeLayout
-
- layout(IReaction, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.TopToBottomAWTReactionLayout
-
- layout(IReaction, String, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.TopToBottomAWTReactionLayout
-
- layout(IAtomContainer, Dimension, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.ZoomToFitAWTLayout
-
- layout(IAtomContainer, Vector2d) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.ZoomToFitAWTLayout
-
- layout(T, Vector2d) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.AbstractDirectLayout
-
- layout(List<IAtomContainer>, Dimension) - Method in interface uk.ac.ebi.reactionblast.graphics.direct.layout.CanvasGenerator
-
- layout(List<IAtomContainer>, Dimension) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.CircularCanvasGenerator
-
- layout(List<IAtomContainer>, Dimension) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.GridCanvasGenerator
-
- layout(IReaction, Vector2d) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.LeftToRightReactionLayout
-
- layout(IAtomContainerSet, Vector2d) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.LinearMoleculeSetLayout
-
- layout(IAtomContainer, Vector2d) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.SingleMoleculeLayout
-
- layout(IReaction, Vector2d) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.TopToBottomReactionLayout
-
- layout(List<IAtomContainer>, Dimension, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.ZoomToFitGridLayout
-
- layout(IAtomContainer, Dimension, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.ZoomToFitLayout
-
- layout(IAtomContainer, Vector2d) - Method in class uk.ac.ebi.reactionblast.graphics.direct.layout.ZoomToFitLayout
-
- layout(IAtomContainer) - Method in class uk.ac.ebi.reactionblast.tools.Reader
-
- layout(IAtomContainer) - Static method in class uk.ac.ebi.reactionblast.tools.TestUtility
-
- layoutAtomID(IAtom, IAtomContainer, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.AtomLayout
-
- layoutAtomSymbol(IAtom, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.AtomLayout
-
- LayoutCheck - Class in uk.ac.ebi.reactionblast.tools
-
- layoutElectronPairs(IAtom, IAtomContainer, int, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.AtomLayout
-
- layoutImplicitHydrogens(IAtom, int, LabelManager.AnnotationPosition, Graphics2D) - Method in class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.AtomLayout
-
- layoutLeftToRight - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- leftRightAlignment - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- LeftToRightAWTReactionLayout - Class in uk.ac.ebi.reactionblast.graphics.direct.awtlayout
-
- LeftToRightAWTReactionLayout() - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.LeftToRightAWTReactionLayout
-
- LeftToRightAWTReactionLayout(Params) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.LeftToRightAWTReactionLayout
-
- leftToRightMoleculeLabelFontSize - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- LeftToRightReactionCenterImage(IReaction, String, String) - Static method in class uk.ac.ebi.reactionblast.tools.ImageGenerator
-
- LeftToRightReactionCenterImageSmall(IReaction, String, String) - Static method in class uk.ac.ebi.reactionblast.tools.ImageGenerator
-
- LeftToRightReactionLayout - Class in uk.ac.ebi.reactionblast.graphics.direct.layout
-
Layout atoms containers by modifying the points in the molecules.
- LeftToRightReactionLayout() - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.layout.LeftToRightReactionLayout
-
- LeftToRightReactionLayout(boolean) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.layout.LeftToRightReactionLayout
-
- LeftToRightReactionLayout(boolean, Vector2d) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.layout.LeftToRightReactionLayout
-
- LeftToRightReactionLayoutImage(IReaction, String, String) - Static method in class uk.ac.ebi.reactionblast.tools.ImageGenerator
-
- LeftToRightReactionLayoutImageSmall(IReaction, String, String) - Static method in class uk.ac.ebi.reactionblast.tools.ImageGenerator
-
- length() - Method in class uk.ac.ebi.reactionblast.fingerprints.MolFingerprint
-
- lift(IAtom, IAtomContainer) - Method in class uk.ac.ebi.reactionblast.stereo.wedge.WedgeStereoLifter
-
- Ligand<A> - Interface in uk.ac.ebi.centres
-
Defines a ligand which in the digraph is a side chain of a central atom.
- LigandComparison - Class in uk.ac.ebi.centres
-
Simple holder for a ligand comparison.
- LigandComparison(Integer, Descriptor.Type) - Constructor for class uk.ac.ebi.centres.LigandComparison
-
Construct a new ligand comparison with order and type.
- LigandSorter<A> - Interface in uk.ac.ebi.centres
-
An injectable sorter for ligands.
- LinearAtomContainerSetLayout - Class in uk.ac.ebi.reactionblast.graphics.direct.awtlayout
-
- LinearAtomContainerSetLayout(Vector2d) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.LinearAtomContainerSetLayout
-
- LinearAtomContainerSetLayout(Vector2d, Params) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.awtlayout.LinearAtomContainerSetLayout
-
- LinearMoleculeSetLayout - Class in uk.ac.ebi.reactionblast.graphics.direct.layout
-
- LinearMoleculeSetLayout(Params) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.layout.LinearMoleculeSetLayout
-
- LinearMoleculeSetLayout(Params, boolean) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.layout.LinearMoleculeSetLayout
-
- LinearMoleculeSetLayout(Params, boolean, Vector2d) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.layout.LinearMoleculeSetLayout
-
- LipinskiRuleOfFiveDescriptor - Class in uk.ac.ebi.reactionblast.tools.descriptors
-
- LipinskiRuleOfFiveDescriptor() - Constructor for class uk.ac.ebi.reactionblast.tools.descriptors.LipinskiRuleOfFiveDescriptor
-
*******************************************
- loadCML(InputStream) - Static method in class uk.ac.ebi.centres.cdk.CMLLoader
-
- lonePairSeparation - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- lu() - Method in class uk.ac.ebi.reactionblast.tools.EBIMatrix
-
LU Decomposition
- LUDecomposition - Class in uk.ac.ebi.reactionblast.tools.matrix
-
LU Decomposition.
- LUDecomposition(EBIMatrix) - Constructor for class uk.ac.ebi.reactionblast.tools.matrix.LUDecomposition
-
LU Decomposition