- HanserRingFinder - Class in org.openscience.smsd.ring
-
Finds the Set of all Rings.
- hasClique(Map<Integer, Integer>, List<Map<Integer, Integer>>) - Method in class org.openscience.smsd.algorithm.vflib.BaseMCS
-
- hasFeature(IFeature) - Method in interface uk.ac.ebi.reactionblast.fingerprints.interfaces.IPatternFingerprinter
-
- hasFeature(IFeature) - Method in class uk.ac.ebi.reactionblast.fingerprints.PatternFingerprinter
-
- hashCode() - Method in class org.openscience.smsd.algorithm.mcsplus.Edge
-
- hashCode() - Method in class org.openscience.smsd.algorithm.vflib.builder.NodeBuilder
-
- hashCode() - Method in class org.openscience.smsd.algorithm.vflib.map.Match
-
- hashCode() - Method in class org.openscience.smsd.AtomAtomMapping
-
- hashCode() - Method in class org.openscience.smsd.mcss.Fragment
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.fingerprints.Feature
-
- hashCode() - Method in interface uk.ac.ebi.reactionblast.fingerprints.interfaces.IFeature
-
Hash code for Pattern
- hashCode() - Method in interface uk.ac.ebi.reactionblast.fingerprints.interfaces.IPatternFingerprinter
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.fingerprints.MolFingerprint
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.fingerprints.PatternFingerprinter
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.blocks.BlockList
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.blocks.DefinedMapping
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.container.helper.Key
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.container.helper.MolMapping
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.mapping.graph.Combination
-
- hashCode() - Method in interface uk.ac.ebi.reactionblast.mapping.interfaces.IKey
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.mechanism.helper.MoleculeMoleculePair
-
- hashCode() - Method in class uk.ac.ebi.reactionblast.mechanism.helper.ReactantProductPair
-
- hasMap(IAtomContainer) - Method in interface org.openscience.smsd.algorithm.vflib.interfaces.IMapper
-
checks if a map exits for a molecule.
- hasMap(IAtomContainer) - Method in class org.openscience.smsd.algorithm.vflib.map.VFMapper
-
checks if a map exits for a molecule.
- hasMap(IAtomContainer) - Method in class org.openscience.smsd.algorithm.vflib.map.VFMCSMapper
-
checks if a map exits for a molecule.
- hasNext() - Method in class uk.ac.ebi.reactionblast.tools.labelling.Permutor
-
- hasNextCandidate() - Method in interface org.openscience.smsd.algorithm.vflib.interfaces.IState
-
Returns true if another candidate match can be found or
false otherwise.
- hasNextCandidate() - Method in class org.openscience.smsd.algorithm.vflib.map.VFMCSState
-
Returns true if another candidate match can be found or
false otherwise.
- hasNextCandidate() - Method in class org.openscience.smsd.algorithm.vflib.map.VFState
-
Returns true if another candidate match can be found or
false otherwise.
- hasPotentialStereoCenter(IAtom, IAtomContainer) - Static method in class uk.ac.ebi.reactionblast.stereo.compare.StereoCenterAnalyser
-
Check an atom to see if it has a potential tetrahedral stereo center.
- hasRMatrix() - Method in class uk.ac.ebi.reactionblast.mechanism.BondChangeAnnotator
-
- hasRMatrix() - Method in class uk.ac.ebi.reactionblast.mechanism.BondChangeCalculator
-
- hasRMatrix() - Method in interface uk.ac.ebi.reactionblast.mechanism.interfaces.IChangeCalculator
-
- highlightAlpha - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- highlightBondStroke - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- highlightColor - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- Highlighter - Interface in uk.ac.ebi.reactionblast.graphics.direct
-
- highlightRadius - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- highlightsAbove - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- highlightsBelow - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- highlightSubgraph(List<IAtom>, Color) - Method in class uk.ac.ebi.reactionblast.graphics.direct.DirectReactionDrawer
-
- highlightSubgraphs(RBlastReaction) - Method in class uk.ac.ebi.reactionblast.graphics.direct.DirectRBLastReactionDrawer
-
- highlightSubgraphs - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
-
- Holder - Class in uk.ac.ebi.reactionblast.mapping.algorithm
-
- Holder(IMappingAlgorithm, String, List<String>, List<String>, ReactionContainer, BestMatch, HydrogenFreeFingerPrintContainer) - Constructor for class uk.ac.ebi.reactionblast.mapping.algorithm.Holder
-
- Holder(int, int) - Constructor for class uk.ac.ebi.reactionblast.mapping.algorithm.Holder
-
- HydrogenFreeFingerPrintContainer - Class in uk.ac.ebi.reactionblast.mapping.container
-
- HydrogenFreeFingerPrintContainer() - Constructor for class uk.ac.ebi.reactionblast.mapping.container.HydrogenFreeFingerPrintContainer
-
HydrogenFreeFingerPrintContainer container
- hypot(Double, Double) - Static method in class uk.ac.ebi.reactionblast.tools.matrix.Maths
-
sqrt(a^2 + b^2) without under/overflow.