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offsetBondDistanceProportion - Variable in class uk.ac.ebi.reactionblast.graphics.direct.Params
 
ofValue(int) - Static method in enum uk.ac.ebi.reactionblast.tools.rxnfile.MDLV2000Writer.SPIN_MULTIPLICITY
Create a SPIN_MULTIPLICITY instance for the specified value.
opaqueHighlightColor - Variable in class uk.ac.ebi.reactionblast.graphics.direct.AbstractHighlightDrawer
 
or(MolFingerprint) - Method in class uk.ac.ebi.reactionblast.fingerprints.MolFingerprint
 
orderAtomArray(List<IAtom>) - Method in class uk.ac.ebi.reactionblast.mechanism.BEMatrix
This method performs the sorting of the atoms of the BEMatrix according to the ArrayList passed as parameter.
org.openscience.cdk.smiles - package org.openscience.cdk.smiles
 
org.openscience.smsd - package org.openscience.smsd
 
org.openscience.smsd.algorithm.matchers - package org.openscience.smsd.algorithm.matchers
 
org.openscience.smsd.algorithm.mcgregor - package org.openscience.smsd.algorithm.mcgregor
 
org.openscience.smsd.algorithm.mcsplus - package org.openscience.smsd.algorithm.mcsplus
 
org.openscience.smsd.algorithm.rgraph - package org.openscience.smsd.algorithm.rgraph
 
org.openscience.smsd.algorithm.single - package org.openscience.smsd.algorithm.single
 
org.openscience.smsd.algorithm.vflib - package org.openscience.smsd.algorithm.vflib
 
org.openscience.smsd.algorithm.vflib.builder - package org.openscience.smsd.algorithm.vflib.builder
 
org.openscience.smsd.algorithm.vflib.interfaces - package org.openscience.smsd.algorithm.vflib.interfaces
 
org.openscience.smsd.algorithm.vflib.map - package org.openscience.smsd.algorithm.vflib.map
 
org.openscience.smsd.algorithm.vflib.query - package org.openscience.smsd.algorithm.vflib.query
 
org.openscience.smsd.algorithm.vflib.seeds - package org.openscience.smsd.algorithm.vflib.seeds
 
org.openscience.smsd.algorithm.vflib.substructure - package org.openscience.smsd.algorithm.vflib.substructure
 
org.openscience.smsd.filters - package org.openscience.smsd.filters
 
org.openscience.smsd.helper - package org.openscience.smsd.helper
 
org.openscience.smsd.interfaces - package org.openscience.smsd.interfaces
 
org.openscience.smsd.mcss - package org.openscience.smsd.mcss
 
org.openscience.smsd.ring - package org.openscience.smsd.ring
 
org.openscience.smsd.tools - package org.openscience.smsd.tools
 
orthonormalize(EBIMatrix) - Method in class uk.ac.ebi.reactionblast.tools.EBIMatrix
Orthonormalize the vectors of this matrix by Gram-Schmidt.
OTHER_RXN - Static variable in class uk.ac.ebi.reactionblast.tools.TestUtility
 
OutlineHighlighter - Class in uk.ac.ebi.reactionblast.graphics.direct
 
OutlineHighlighter(Params) - Constructor for class uk.ac.ebi.reactionblast.graphics.direct.OutlineHighlighter
 
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