public abstract class Debugger extends BasicDebugger
Constructor and Description |
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Debugger() |
Modifier and Type | Method and Description |
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protected void |
generateImage(java.lang.String outPutFileName,
org.openscience.cdk.interfaces.IAtomContainer query,
org.openscience.cdk.interfaces.IAtomContainer target,
Isomorphism smsd) |
protected void |
printCliqueMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap)
Prints Clique Matrix
|
protected void |
printEnergyMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap) |
protected void |
printFlagMatrix(ChooseWinner Max,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap) |
protected void |
printFragmentMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap) |
protected void |
printGraphMatching(IAtomMapping comparison,
org.openscience.cdk.interfaces.IAtomContainer mol1,
org.openscience.cdk.interfaces.IAtomContainer mol2)
Print Graph matching solutions
|
protected void |
printMatrixAtomContainer(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap)
Prints reactant and product atom container in the matrix
|
protected void |
printSimMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap)
Prints Similarity Matrix
|
protected void |
printSMILES(Holder mh,
int substrateIndex,
int productIndex) |
protected void |
printStereoMatrix(Holder mh,
java.util.List<java.lang.String> EdMap,
java.util.List<java.lang.String> PdMap) |
printAtomAtomMapping, printAtoms, printMolecule, printReaction
protected void printMatrixAtomContainer(Holder mh, java.util.List<java.lang.String> EdMap, java.util.List<java.lang.String> PdMap)
mh
- EdMap
- PdMap
- protected void printCliqueMatrix(Holder mh, java.util.List<java.lang.String> EdMap, java.util.List<java.lang.String> PdMap)
mh
- EdMap
- PdMap
- protected void printSimMatrix(Holder mh, java.util.List<java.lang.String> EdMap, java.util.List<java.lang.String> PdMap)
mh
- EdMap
- PdMap
- protected void printFlagMatrix(ChooseWinner Max, java.util.List<java.lang.String> EdMap, java.util.List<java.lang.String> PdMap)
Max
- EdMap
- PdMap
- protected void printStereoMatrix(Holder mh, java.util.List<java.lang.String> EdMap, java.util.List<java.lang.String> PdMap)
mh
- EdMap
- PdMap
- protected void printFragmentMatrix(Holder mh, java.util.List<java.lang.String> EdMap, java.util.List<java.lang.String> PdMap)
mh
- EdMap
- PdMap
- protected void printEnergyMatrix(Holder mh, java.util.List<java.lang.String> EdMap, java.util.List<java.lang.String> PdMap)
mh
- EdMap
- PdMap
- protected void printGraphMatching(IAtomMapping comparison, org.openscience.cdk.interfaces.IAtomContainer mol1, org.openscience.cdk.interfaces.IAtomContainer mol2)
comparison
- mol1
- mol2
- protected void generateImage(java.lang.String outPutFileName, org.openscience.cdk.interfaces.IAtomContainer query, org.openscience.cdk.interfaces.IAtomContainer target, Isomorphism smsd)
outPutFileName
- query
- target
- smsd
- protected void printSMILES(Holder mh, int substrateIndex, int productIndex) throws java.lang.CloneNotSupportedException, java.io.IOException, org.openscience.cdk.exception.CDKException
mh
- substrateIndex
- productIndex
- java.lang.CloneNotSupportedException
java.io.IOException
org.openscience.cdk.exception.CDKException