public class TargetProcessor
extends java.lang.Object
Modifier | Constructor and Description |
---|---|
protected |
TargetProcessor(java.util.List<java.lang.String> cTab2Copy,
java.lang.String[] signArray,
int neighbor_bondnum_B,
int set_bondnum_B,
java.util.List<java.lang.Integer> iBondNeighborsB,
java.util.List<java.lang.String> cBondNeighborsB,
int newNeighborNumA,
java.util.List<java.lang.Integer> newINeighborsA,
java.util.List<java.lang.String> newCNeighborsA) |
Modifier and Type | Method and Description |
---|---|
protected int |
getBondNumB() |
protected int |
getNeighborBondNumB() |
protected void |
process(org.openscience.cdk.interfaces.IAtomContainer target,
java.util.List<java.lang.Integer> unmapped_atoms_molB,
int mappingSize,
java.util.List<java.lang.Integer> i_bond_setB,
java.util.List<java.lang.String> c_bond_setB,
java.util.List<java.lang.Integer> mapped_atoms,
int counter) |
protected void |
process(int setNumB,
java.util.List<java.lang.Integer> unmapped_atoms_molB,
int newMapingSize,
java.util.List<java.lang.Integer> i_bond_setB,
java.util.List<java.lang.String> c_bond_setB,
java.util.List<java.lang.Integer> new_Mapping,
int counter,
java.util.List<java.lang.Integer> new_i_bond_setB,
java.util.List<java.lang.String> new_c_bond_setB) |
protected TargetProcessor(java.util.List<java.lang.String> cTab2Copy, java.lang.String[] signArray, int neighbor_bondnum_B, int set_bondnum_B, java.util.List<java.lang.Integer> iBondNeighborsB, java.util.List<java.lang.String> cBondNeighborsB, int newNeighborNumA, java.util.List<java.lang.Integer> newINeighborsA, java.util.List<java.lang.String> newCNeighborsA)
cTab2Copy
- signArray
- neighbor_bondnum_B
- set_bondnum_B
- iBondNeighborsB
- cBondNeighborsB
- newNeighborNumA
- newINeighborsA
- newCNeighborsA
- protected void process(org.openscience.cdk.interfaces.IAtomContainer target, java.util.List<java.lang.Integer> unmapped_atoms_molB, int mappingSize, java.util.List<java.lang.Integer> i_bond_setB, java.util.List<java.lang.String> c_bond_setB, java.util.List<java.lang.Integer> mapped_atoms, int counter)
target
- unmapped_atoms_molB
- mappingSize
- i_bond_setB
- c_bond_setB
- mapped_atoms
- counter
- protected void process(int setNumB, java.util.List<java.lang.Integer> unmapped_atoms_molB, int newMapingSize, java.util.List<java.lang.Integer> i_bond_setB, java.util.List<java.lang.String> c_bond_setB, java.util.List<java.lang.Integer> new_Mapping, int counter, java.util.List<java.lang.Integer> new_i_bond_setB, java.util.List<java.lang.String> new_c_bond_setB)
setNumB
- unmapped_atoms_molB
- newMapingSize
- i_bond_setB
- c_bond_setB
- new_Mapping
- counter
- new_i_bond_setB
- new_c_bond_setB
- protected int getNeighborBondNumB()
protected int getBondNumB()