public abstract class BaseGameTheory extends Debugger implements IGameTheory, java.io.Serializable
Constructor and Description |
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BaseGameTheory() |
Modifier and Type | Method and Description |
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java.lang.String |
getSuffix() |
protected static boolean |
isPseudoAtoms(org.openscience.cdk.interfaces.IAtomContainer atomContainer)
Checks if a PseudoAtom is present
|
void |
UpdateMatrix(java.util.Collection<MCSSolution> mcsSolutions,
Holder mh,
boolean removeHydrogen) |
void |
UpdateMatrix(Holder mh,
boolean removeHydrogen) |
generateImage, printCliqueMatrix, printEnergyMatrix, printFlagMatrix, printFragmentMatrix, printGraphMatching, printMatrixAtomContainer, printSimMatrix, printSMILES, printStereoMatrix
printAtomAtomMapping, printAtoms, printMolecule, printReaction
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getDelta, getReactionMolMapping, setReactionMolMapping
protected static boolean isPseudoAtoms(org.openscience.cdk.interfaces.IAtomContainer atomContainer)
atomContainer
- public java.lang.String getSuffix() throws java.io.IOException
getSuffix
in interface IGameTheory
java.io.IOException
public void UpdateMatrix(Holder mh, boolean removeHydrogen) throws java.lang.InterruptedException
UpdateMatrix
in interface IGameTheory
mh
- matrix holderremoveHydrogen
- java.lang.InterruptedException
public void UpdateMatrix(java.util.Collection<MCSSolution> mcsSolutions, Holder mh, boolean removeHydrogen) throws java.lang.Exception
UpdateMatrix
in interface IGameTheory
mcsSolutions
- mh
- matrix holderremoveHydrogen
- java.lang.Exception