public class RBlastAtomSignature
extends signature.AbstractVertexSignature
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
CHARGE_SEPARATOR |
Constructor and Description |
---|
RBlastAtomSignature(int atomIndex,
org.openscience.cdk.interfaces.IAtomContainer atomContainer) |
RBlastAtomSignature(int atomIndex,
org.openscience.cdk.interfaces.IAtomContainer atomContainer,
int height) |
Modifier and Type | Method and Description |
---|---|
protected int |
convertEdgeLabelToColor(java.lang.String edgeLabel) |
protected int[] |
getConnected(int atomIndex) |
protected java.lang.String |
getEdgeLabel(int atomIndexA,
int atomIndexB) |
protected int |
getIntLabel(int atomIndex) |
java.lang.String |
getVertexSymbol(int atomIndex) |
boolean |
isBondSensitive() |
boolean |
isUseAromatics() |
boolean |
isUseCharge() |
void |
setBondSensitive(boolean isBondSensitive) |
void |
setUseAromatics(boolean useAromatics) |
void |
setUseCharge(boolean useCharge) |
public static final java.lang.String CHARGE_SEPARATOR
public RBlastAtomSignature(int atomIndex, org.openscience.cdk.interfaces.IAtomContainer atomContainer)
atomIndex
- atomContainer
- public RBlastAtomSignature(int atomIndex, org.openscience.cdk.interfaces.IAtomContainer atomContainer, int height)
atomIndex
- atomContainer
- height
- public boolean isUseAromatics()
public void setUseAromatics(boolean useAromatics)
useAromatics
- public boolean isUseCharge()
public void setUseCharge(boolean useCharge)
useCharge
- public boolean isBondSensitive()
public void setBondSensitive(boolean isBondSensitive)
isBondSensitive
- public java.lang.String getVertexSymbol(int atomIndex)
getVertexSymbol
in class signature.AbstractVertexSignature
atomIndex
- protected int[] getConnected(int atomIndex)
getConnected
in class signature.AbstractVertexSignature
atomIndex
- protected java.lang.String getEdgeLabel(int atomIndexA, int atomIndexB)
getEdgeLabel
in class signature.AbstractVertexSignature
atomIndexA
- atomIndexB
- protected int getIntLabel(int atomIndex)
getIntLabel
in class signature.AbstractVertexSignature
atomIndex
- protected int convertEdgeLabelToColor(java.lang.String edgeLabel)
convertEdgeLabelToColor
in class signature.AbstractVertexSignature
edgeLabel
-