--------
Notebook
--------

Data specific information for medication files:
(i) /raw_data/MGB_Biobank: EMPI[Identifier of participants]|Medication_Date[Date of medications]|Medication[Medication records]|Hospital[Hospital resources]|
(ii) /raw_data/PPMI: PATNO[Identifier of participants]|CMTRT[Medication records]|STARTDT[Date of medications]|
(iii) /raw_data/PDBP: Study_ID[Study ID of different resources]|PATNO[Identifier of participants]|CMTRT[Medication records]|EVENT_ID[Date of medications]|
(iiii) /processed_data/drug_dictionary_*: CMTRT[Medication records]|DrugName[Generic drug name of medications]


Data specific information for other files:
(i) /raw_data/MGB_Biobank: EMPI[Identifier of participants]|Date_of_Birth[Date of birth]|Age[Age of participants]|Gender_Legal_Sex[Sex of participants]|Race_Group[Race of participants]
(ii) /raw_data/PPMI: PATNO[Identifier of participants]|COHORT[Primary PD/HC group of participants]|CONCOHORT[Validated PD/HC group of participants]|subgroup[Detailed group of participants]|EVENT_ID[Date of records]|YEAR[Date of records]|age[Age at enrollment]|age_at_visit[Age at visit]|SEX[Sex of participants]|educ[Educational level of participants]|race[Race of participants]|moca[MoCA score -- cognition]|updrs3_score[UPDRS III score -- motor]|source[Source of participants]
(iii) /raw_data/PDBP: PATNO[Identifier of participants]|COHORT[Primary PD/HC group of participants]|CONCOHORT[Validated PD/HC group of participants]|subgroup[Detailed group of participants]|EVENT_ID[Date of records]|YEAR[Date of records]|age[Age at enrollment]|age_at_visit[Age at visit]|SEX[Sex of participants]|educ[Educational level of participants]|race[Race of participants]|moca[MoCA score -- cognition]|updrs3_score[UPDRS III score -- motor]|source[Source of participants]
(iiii) /raw_data/atccodes.csv: ATC.code[ATC codes of drugs]|Name[Name of drugs]
(iiiii) /raw_data/export_Touchstone.txt: Name[Name of drugs]|Target[Protein target genes of drugs]|MoA[Mechanism of action]
(iiiiii) /results/PD_risk_results_AMPPD.xlsx: DrugName[Name of drugs]|OR[Odds ratio]|CI_lower[Lower limitation of 95% confidence interval]|CI_upper[Upper limitation of 95% confidence interval]|p_value[p value]|Y_case[Cases that ever on drug]|Y_ctrl[Controls that ever on drug]|N_case[Cases that never on drug]|N_ctrl[Controls that never on drug]
(iiiiiii) /results/PD_risk_results_MGB.xlsx: DrugName[Name of drugs]|OR[Odds ratio]|CI_lower[Lower limitation of 95% confidence interval]|CI_upper[Upper limitation of 95% confidence interval]|p_value[p value]|Y_case[Cases that ever on drug]|Y_ctrl[Controls that ever on drug]|N_case[Cases that never on drug]|N_ctrl[Controls that never on drug]
(iiiiiiii) /results/AMPPD_with_ATC_update.xlsx: DrugName[Name of drugs]|ATC.code[ATC codes of drugs]
(iiiiiiiii) /results/MGB_with_ATC_update.xlsx: DrugName[Name of drugs]|ATC.code[ATC codes of drugs]