Index

_

__init__() (SOAPy_st.tl.lr_pairs method) (SOAPy_st.tl.TensorDecomposition method)

A

adata_from_mask() (in module SOAPy_st.tl)

ANOVA() (in module SOAPy_st.tl)

C

cal_aucell() (in module SOAPy_st.tl) cal_spark() (in module SOAPy_st.tl) cal_sparkX() (in module SOAPy_st.tl)

cal_spatialDE() (in module SOAPy_st.tl) cell_level_communications() (in module SOAPy_st.tl) cell_type_level_communication() (in module SOAPy_st.tl)

D

domain_from_local_moran() (in module SOAPy_st.tl)

domain_from_STAGATE() (in module SOAPy_st.tl)

G

gene_cluster() (in module SOAPy_st.tl) get_c_niche() (in module SOAPy_st.tl)

get_mask_from_domain() (in module SOAPy_st.tl) global_moran() (in module SOAPy_st.tl)

I

infiltration_analysis() (in module SOAPy_st.tl)

L

lr_pairs (class in SOAPy_st.tl)

M

make_network() (in module SOAPy_st.pp) module SOAPy_st, [1], [2], [3] SOAPy_st.pl, [1], [2], [3], [4], [5], [6] SOAPy_st.pp, [1], [2] SOAPy_st.tl, [1], [2], [3], [4], [5], [6]

N

neighborhood_analysis() (in module SOAPy_st.tl)

R

read_csv2adata() (in module SOAPy_st.pp) read_dsp2adata() (in module SOAPy_st.pp)

read_mult_image2adata() (in module SOAPy_st.pp) read_visium2adata() (in module SOAPy_st.pp)

S

show_box_plot() (in module SOAPy_st.pl) show_ccc_dotplot() (in module SOAPy_st.pl) show_ccc_embedding() (in module SOAPy_st.pl) show_ccc_netplot() (in module SOAPy_st.pl) show_celltype_niche_heatmap() (in module SOAPy_st.pl) show_celltype_sample_heatmap() (in module SOAPy_st.pl) show_curves_cluster() (in module SOAPy_st.pl) show_factor_matrix_in_CP_tensor() (in module SOAPy_st.pl) show_factor_matrix_in_tucker_tensor() (in module SOAPy_st.pl) show_infiltration_analysis() (in module SOAPy_st.pl) show_moran_scatterplot() (in module SOAPy_st.pl) show_neighborhood_analysis() (in module SOAPy_st.pl) show_network() (in module SOAPy_st.pl) show_niche_environment() (in module SOAPy_st.pl) show_niche_sample_heatmap() (in module SOAPy_st.pl)

show_proportion_in_CP() (in module SOAPy_st.pl) show_proportion_in_tucker() (in module SOAPy_st.pl) show_tendency() (in module SOAPy_st.pl) show_voronoi() (in module SOAPy_st.pl) SOAPy_st module, [1], [2], [3] SOAPy_st.pl module, [1], [2], [3], [4], [5], [6] SOAPy_st.pp module, [1], [2] SOAPy_st.tl module, [1], [2], [3], [4], [5], [6] spatial_tendency() (in module SOAPy_st.tl) spearman_correlation() (in module SOAPy_st.tl) st_Seurat2Anndata() (in module SOAPy_st.pp)

T

TensorDecomposition (class in SOAPy_st.tl)

W

wilcoxon_test() (in module SOAPy_st.tl)