pp

Read

`pp.read_csv2adata`(express, location[, ...])	To read Barcode_based spatial omics data.
`pp.read_mult_image2adata`(image, mask[, ...])	To read Image_based spatial omics data.
`pp.read_visium2adata`(path[, count_file, ...])	Read spatial transcriptomics data of 10X Visium.
`pp.read_dsp2adata`(information_file[, ...])	Read spatial transcriptomics data of NanoString GeoMx DSP.

Seurat to Anndata

pp.st_Seurat2Anndata(seurat_file[, ...])

Transform the Seurat .rds spatial omics data into Anndata.

Spatial network

pp.make_network(adata[, sample_key, sample, ...])

A function to create a network based on spatial information. We offer four different ways to build a network: KNN network, range radiation network, regular network and First-order neighbor network.