SOAPy_st.tl.lr_pairs

class SOAPy_st.tl.lr_pairs(lr_data: DataFrame, Annotation_key: str | None = 'annotation', ligand_key: str | None = 'ligand_symbol', receptor_key: str | None = 'receptor_symbol')

Class for ligand and receptor pairs

__init__(lr_data: DataFrame, Annotation_key: str | None = 'annotation', ligand_key: str | None = 'ligand_symbol', receptor_key: str | None = 'receptor_symbol')

Parameters

lr_datapd.DataFrame

Ligand and receptor information database. Default: CellChat database

Annotation_keystr

The key of Annotation (Contact or secretory) in lr_data

ligand_keystr

The key of ligand in lr_data

receptor_keystr

The key of receptor in lr_data

Methods

__init__(lr_data[, Annotation_key, ...])	Parameters lr_data pd.DataFrame Ligand and receptor information database. Default: CellChat database Annotation_key str The key of Annotation (Contact or secretory) in lr_data ligand_key str The key of ligand in lr_data receptor_key str The key of receptor in lr_data
get_complexes([complex_sep])	Get the names of all the complexes