SOAPy_st.pp.read_csv2adata

SOAPy_st.pp.read_csv2adata(express: PathLike | str | DataFrame, location: PathLike | str | DataFrame, express_kwargs: dict = {}, location_kwargs: dict = {}) → AnnData

To read Barcode_based spatial omics data. Slide seqV2, Stereo seq and other table data

Parameters

expressUnion[PathLike, str, pd.DataFrame]

Count matrix file or its path.

locationUnion[PathLike, str, pd.DataFrame]

Coordinates matrix file or its path.

scalefloat

The scale of the coordinates, usually for visual matching with different resolutions of HE or other images, is not scaled by default.

express_kwargsdict

Other params of pd.read_csv(express)

location_kwargsdict

Other params of pd.read_csv(location)

Returns

anndata.Anndata object