SOAPy_st.pl.show_tendency

SOAPy_st.pl.show_tendency(adata: AnnData, gene_name: str | list, method: str = 'poly', one_axes: bool = True, palette: Sequence[str] | ListedColormap | dict | None = None, norm: bool = False, figsize: Tuple[float, float] | None = None, dpi: int = 100, grid: bool = False, show: bool = True, save: str | PathLike | None = None, legend_kwargs: dict = {}, **kwargs: Any) → Axes | Sequence[Axes] | None

Plot the tendency curve of the genes.

Parameters

adataanndata.AnnData

An AnnData object containing spatial omics data and spatial information.

gene_nameUnion[list, str, None], optional

The gene names for the regression model need to be calculated.

methodLiteral[‘poly’, ‘loess’], optional

Polynomial regression(poly) or Loess regression(loess).

one_axesbool

Whether to plot all curves on the same axis.

paletteUnion[Sequence[str], Cycler, dict], optional

Colors to use for plotting annotation groups.

normbool

Normalize the values of the curves.

figsizeTuple[Any, Any]

The size of format figure.(width, height).

dpiint

Dots per inch values for the output.

gridbool

Whether to show the grid or not.

showbool

Show this plot.

saveUnion[str, PathLike]

The path where the image is stored.

legend_kwargsdict, optional

Other params of plt.legend(). Only used in ‘one_axes == True’.

kwargs

Other params of ax.plot().

Returns

If show==False, return Axes or a list of Axes.