SOAPy_st.pl.show_neighborhood_analysis

SOAPy_st.pl.show_neighborhood_analysis(adata: AnnData, method: Literal['excluded', 'include'] = 'excluded', sample_id: int | str | None = None, figsize: Tuple[float, float] | None = (8, 8), dpi: int = 100, title: str | None = None, vmin: float | None = None, vmax: float | None = None, cmap: Any | None = None, show: bool = True, save: str | PathLike | None = None, ax: Axes | None = None, **kwargs: Any) → Axes | None

Use heatmap to display the results of neighbor analysis

Parameters

adataanndata.AnnData

An AnnData object containing spatial omics data and spatial information.

figsizeTuple[float, float], optional

(Width, height) of the figure.

dpifloat, optional

The resolution of the figure.

titlestr, optional

The title of shown figure.

axAxes

A matplotlib axes object.

showbool

Show the plot, do not return axis.

saveUnion[str, PathLike], optional

The path where the image is stored.

methodstr, optional

‘included’: Z-scores of edges between two cell types were counted directly after randomization. ‘excluded’: After randomization, remove self-connected edges between cells of the same type and calculate the

z-score of edges between two cell types.

sample_idUnion[int, str], optional

The sample number which to be shown.

cmap

Color map to use for continous variables.

vmin

Lower end of scale bar.

vmax

Upper end of scale bar.

kwargsAny

Other params of sns.heatmap()

Returns