get_microbiome_data.Rd
Test microbiome data in phyloseq format.
get_microbiome_data(disease, study)
disease | Disease of interest as shown in list_microbiome_data() |
---|---|
study | Name of the study as shown in list_microbiome_data() |
phyloseq-class
object.
You can download few example datasets in phyloseq format from Duvallet et al 2017 https://www.nature.com/articles/s41467-017-01973-8.pdf?origin=ppub. The source file for these data is the microbiomedatarepo https://github.com/microsud/microbiomedatarepo.
# NOT RUN { # Example data library(microbiome) library(microbiomeUtilities) list_microbiome_data() ps1 <- get_microbiome_data(disease = "CDI", "Schubert2014_CDI") print_ps(ps1) # }