Data frame with mean, max, median standard deviation of relative abundance.

taxa_summary(x, level)

Arguments

x

phyloseq-class object

level

Taxonomic level for which summary is required

Value

returns a data frame with relative abundance summary.

Examples

# NOT RUN {
    # Example data
    library(microbiomeutilities)
    data("zackular2014")
    p0 <- zackular2014
    p0.rel <- microbiome::transform(p0, "compositional")
    tx.sum1 <- taxa_summary(p0, "Phylum")

    tx.sum2 <- taxa_summary(p0.rel, "Phylum")

# }