Index

A

add_obo_curies() (vfb_connect.owl.owlery_query_tools.OWLeryConnect method)

B

batch_query() (in module vfb_connect.neo.query_wrapper)

C

chunks() (in module vfb_connect.neo.neo4j_tools) cli_credentials() (in module vfb_connect.neo.neo4j_tools) cli_neofj_connect() (in module vfb_connect.neo.neo4j_tools)

commit_csv() (vfb_connect.neo.neo4j_tools.Neo4jConnect method) commit_list() (vfb_connect.neo.neo4j_tools.Neo4jConnect method) commit_list_in_chunks() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)

D

dequote() (in module vfb_connect.cross_server_tools)

dict_cursor() (in module vfb_connect.neo.neo4j_tools)

E

escape_string() (in module vfb_connect.neo.neo4j_tools)

G

gen_short_form() (in module vfb_connect.cross_server_tools) (in module vfb_connect.owl.owlery_query_tools) gen_simple_report() (in module vfb_connect.neo.query_wrapper) get_anatomical_individual_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_connected_neurons_by_type() (vfb_connect.cross_server_tools.VfbConnect method) get_DataSet_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_datasets() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_dbs() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_default_servers() (in module vfb_connect.default_servers) get_images() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_images_by_filename() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_images_by_type() (vfb_connect.cross_server_tools.VfbConnect method) get_instances() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.owl.owlery_query_tools.OWLeryConnect method) get_instances_by_dataset() (vfb_connect.cross_server_tools.VfbConnect method)

get_lookup() (vfb_connect.neo.neo4j_tools.Neo4jConnect method) get_neurons_downstream_of() (vfb_connect.cross_server_tools.VfbConnect method) get_neurons_upstream_of() (vfb_connect.cross_server_tools.VfbConnect method) get_similar_neurons() (vfb_connect.cross_server_tools.VfbConnect method) get_subclasses() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.owl.owlery_query_tools.OWLeryConnect method) get_superclasses() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.owl.owlery_query_tools.OWLeryConnect method) get_template_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_templates() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_terms_by_region() (vfb_connect.cross_server_tools.VfbConnect method) get_terms_by_xref() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_type_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method) get_vfb_link() (vfb_connect.cross_server_tools.VfbConnect method)

L

labels_2_ids() (vfb_connect.owl.owlery_query_tools.OWLeryConnect method) list_all_edge_props() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)

list_all_node_props() (vfb_connect.neo.neo4j_tools.Neo4jConnect method) lookup_id() (vfb_connect.cross_server_tools.VfbConnect method)

M

module vfb_connect vfb_connect.cross_server_tools vfb_connect.default_servers vfb_connect.neo vfb_connect.neo.neo4j_tools vfb_connect.neo.query_wrapper vfb_connect.neo.test vfb_connect.neo.test.neo_tools_tests vfb_connect.owl vfb_connect.owl.owlery_query_tools

N

Neo4jConnect (class in vfb_connect.neo.neo4j_tools)

Neo4jConnectTest (class in vfb_connect.neo.test.neo_tools_tests) NeoQueryWrapperTest (class in vfb_connect.neo.test.neo_tools_tests)

O

OWLeryConnect (class in vfb_connect.owl.owlery_query_tools)

Q

query() (vfb_connect.owl.owlery_query_tools.OWLeryConnect method)

QueryWrapper (class in vfb_connect.neo.query_wrapper)

R

rest_return_check() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)

S

setUp() (vfb_connect.neo.test.neo_tools_tests.Neo4jConnectTest method) (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)

T

test_connection() (vfb_connect.neo.neo4j_tools.Neo4jConnect method) test_get_anatomical_individual_TermInfo() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_get_DataSet_TermInfo() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_get_datasets() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_get_image_by_filename() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_get_templates() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)

test_get_term_info() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_get_terms_by_xref() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_get_type_term_info() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_get_vfb_id_by_xref() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_get_xref_by_vfbid() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method) test_lookup_gen() (vfb_connect.neo.test.neo_tools_tests.Neo4jConnectTest method)

V

vfb_connect module vfb_connect.cross_server_tools module vfb_connect.default_servers module vfb_connect.neo module vfb_connect.neo.neo4j_tools module vfb_connect.neo.query_wrapper module

vfb_connect.neo.test module vfb_connect.neo.test.neo_tools_tests module vfb_connect.owl module vfb_connect.owl.owlery_query_tools module vfb_id_2_neuprint_bodyID() (vfb_connect.neo.query_wrapper.QueryWrapper method) vfb_id_2_xrefs() (vfb_connect.neo.query_wrapper.QueryWrapper method) VfbConnect (class in vfb_connect.cross_server_tools)

X

xref_2_vfb_id() (vfb_connect.neo.query_wrapper.QueryWrapper method)