Function reference • iRfcb

Main functions
`ifcb_convert_filenames()`	Convert IFCB Filenames to Timestamps
`ifcb_correct_annotation()`	Correct Annotations in MATLAB Classlist Files
`ifcb_count_mat_annotations()`	Count IFCB Annotations from .mat Files
`ifcb_create_manifest()`	Create a MANIFEST.txt file
`ifcb_download_test_data()`	Download test IFCB data
`ifcb_extract_annotated_images()`	Extract Annotated Images from IFCB Data
`ifcb_extract_biovolumes()`	Extract biovolumes from IFCB data and compute carbon content
`ifcb_extract_classified_images()`	Extract Taxa Images from MATLAB Classified Sample
`ifcb_extract_pngs()`	Extract Images from IFCB ROI File
`ifcb_get_mat_names()`	Get Variable Names from a MAT File
`ifcb_get_mat_variable()`	Get Classes from a MAT File
`ifcb_get_runtime()`	Read IFCB Header File and Extract Runtime Information
`ifcb_get_shark_colnames()`	Get Shark Column Names
`ifcb_get_svea_position()`	Get GPS coordinates from ferrybox data based on timestamps
`ifcb_get_trophic_type()`	Get Trophic Type for a List of Plankton Taxa
`ifcb_is_diatom()`	Identify Diatoms in Taxa List
`ifcb_is_in_basin()`	Check if Points are in a Specific Sea Basin
`ifcb_is_near_land()`	Determine if Positions are Near Land
`ifcb_psd()`	Plot and Save IFCB PSD Data
`ifcb_psd_plot()`	Generate PSD Plot for a Given Sample
`ifcb_py_install()`	Install iRfcb Python Environment
`ifcb_read_features()`	Read feature files from a specified folder
`ifcb_read_hdr_data()`	Reads HDR Data from IFCB HDR Files
`ifcb_read_summary()`	Read and Summarize Classified IFCB Data
`ifcb_replace_mat_values()`	Replace Values in MATLAB Classlist
`ifcb_run_image_gallery()`	Run IFCB Image Gallery
`ifcb_summarize_biovolumes()`	Summarize biovolumes and carbon content from IFCB data
`ifcb_summarize_class_counts()`	Count Cells from TreeBagger Classifier Output
`ifcb_summarize_png_data()`	Summarize Image Counts by Class and Sample
`ifcb_volume_analyzed()`	Estimate Volume Analyzed from IFCB Header File
`ifcb_volume_analyzed_from_adc()`	Estimate Volume Analyzed from IFCB ADC File
`ifcb_which_basin()`	Determine if Points are in a Specified Sea Basin
`ifcb_zip_matlab()`	Create a Zip Archive of Manual MATLAB Files
`ifcb_zip_pngs()`	Zip PNG Folders
Helper functions
`create_package_manifest()`	Function to create MANIFEST.txt
`.onLoad()`	Load iRfcb Python Environment on Package Load
`extract_aphia_id()`	Extract the AphiaID from the first row of each worms_records tibble
`extract_class()`	Extract the class from the first row of each worms_records tibble
`extract_parts()`	Function to extract parts using regular expressions
`find_matching_data()`	Function to find matching data files with a general pattern
`find_matching_features()`	Function to find matching feature files with a general pattern
`handle_missing_positions()`	Handle Missing Positions by Rounding Timestamps
`print_progress()`	Function to print the progress bar
`read_hdr_file()`	Function to read individual files and extract relevant lines
`summarize_TBclass()`	Summarize TreeBagger Classifier Results
`truncate_folder_name()`	Function to truncate the folder name
`vol2C_lgdiatom()`	Convert Biovolume to Carbon for Large Diatoms
`vol2C_nondiatom()`	Convert Biovolume to Carbon for Non-Diatom Protists

Reference

Main functions

Helper functions