ifcb_volume_analyzed_from_adc.RdThis function reads an IFCB ADC file to extract sample run time and inhibittime, and returns the associated estimate of sample volume analyzed (in milliliters). The function assumes a standard IFCB configuration with a sample syringe operating at 0.25 mL per minute. For IFCB instruments after 007 and higher (except 008). This is the R equivalent function of `IFCB_volume_analyzed_fromADC` from the `ifcb-analysis repository` (Sosik and Olson 2007).
ifcb_volume_analyzed_from_adc(adc_file)A character vector specifying the path(s) to one or more .adc files or URLs.
A list containing: - ml_analyzed: A numeric vector of estimated sample volume analyzed for each ADC file. - inhibittime: A numeric vector of inhibittime values extracted from ADC files. - runtime: A numeric vector of runtime values extracted from ADC files.
Sosik, H. M. and Olson, R. J. (2007), Automated taxonomic classification of phytoplankton sampled with imaging-in-flow cytometry. Limnol. Oceanogr: Methods 5, 204–216.
if (FALSE) {
# Example: Estimate volume analyzed from an IFCB ADC file
adc_file <- "path/to/IFCB_adc_file.csv"
adc_info <- ifcb_volume_analyzed_from_adc(adc_file)
print(adc_info$ml_analyzed)
}