Retrieve data from BacDive
retrieve_data(searchTerm, searchType = "taxon")
searchTerm | Mandatory character string (in case of |
---|---|
searchType | Mandatory character string that specifies which type of
search will be performed (technically, which API endpoint). Can be |
A list of lists containing either a single BacDive dataset in case
the searchTerm
was unambiguous (bacdive_id
, sequence
,
culturecollectionno
), or a large list containing all datasets that match
an ambiguous searchTerm
(most taxon
s).
dataset <- retrieve_data(searchTerm = 717, searchType = "bacdive_id")#># dataset <- retrieve_data(searchTerm = "DSM 319", searchType = "culturecollectionno") # dataset <- retrieve_data(searchTerm = "AJ000733", searchType = "sequence") # Bss_data <- retrieve_data(searchTerm = "Bacillus subtilis subtilis")