2024-07-03 15:16:09,783 ######################################################
2024-07-03 15:16:09,784 # Chromatin module similarity scores ©Olga Pushkarev #
2024-07-03 15:16:09,784 ######################################################
2024-07-03 15:16:09,784 
List of arguments:

2024-07-03 15:16:09,784 Input:
2024-07-03 15:16:09,784 	 1. Input dataset: test_data
2024-07-03 15:16:09,784 	 2. Using the following methods: vcmtools, clomics, phm
2024-07-03 15:16:09,784 	 3. Path to chromatin module peaks: /data/pushkare/Chromatin_modules/2.peaks_in_CMs/peak_files
2024-07-03 15:16:09,784 	 4. Path to overlapping peaks: /data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data
2024-07-03 15:16:09,784 	 5. Use only chromatin modules with cmQTLs? No
2024-07-03 15:16:09,784 	 6. Score type: HM ( Harmonic mean )
2024-07-03 15:16:09,784 	 7. Similarity thresholds in range [0.0, 1.0] with step 0.1
2024-07-03 15:16:09,784 	 8. Overwrite .npy files with scores?: Yes

2024-07-03 15:16:09,784 	 9. Posterior probability threshold for phm: 0.8

2024-07-03 15:16:09,784 Output:
2024-07-03 15:16:09,784 	 1. Output directory for similarity scores:/data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data/HM

2024-07-03 15:16:09,796 Calculating the similarity scores for chromatin modules...
2024-07-03 15:17:11,632 ######################################################
2024-07-03 15:17:11,632 # Chromatin module similarity scores ©Olga Pushkarev #
2024-07-03 15:17:11,632 ######################################################
2024-07-03 15:17:11,632 
List of arguments:

2024-07-03 15:17:11,632 Input:
2024-07-03 15:17:11,632 	 1. Input dataset: test_data
2024-07-03 15:17:11,632 	 2. Using the following methods: vcmtools, clomics, phm
2024-07-03 15:17:11,632 	 3. Path to chromatin module peaks: /data/pushkare/Chromatin_modules/2.peaks_in_CMs/peak_files
2024-07-03 15:17:11,632 	 4. Path to overlapping peaks: /data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data
2024-07-03 15:17:11,632 	 5. Use only chromatin modules with cmQTLs? No
2024-07-03 15:17:11,632 	 6. Score type: HM ( Harmonic mean )
2024-07-03 15:17:11,632 	 7. Similarity thresholds in range [0.0, 1.0] with step 0.1
2024-07-03 15:17:11,632 	 8. Overwrite .npy files with scores?: Yes

2024-07-03 15:17:11,632 	 9. Posterior probability threshold for phm: 0.8

2024-07-03 15:17:11,632 Output:
2024-07-03 15:17:11,632 	 1. Output directory for similarity scores:/data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data/HM

2024-07-03 15:17:11,645 Calculating the similarity scores for chromatin modules...
2024-07-03 15:18:10,419 ######################################################
2024-07-03 15:18:10,420 # Chromatin module similarity scores ©Olga Pushkarev #
2024-07-03 15:18:10,420 ######################################################
2024-07-03 15:18:10,420 
List of arguments:

2024-07-03 15:18:10,420 Input:
2024-07-03 15:18:10,420 	 1. Input dataset: test_data
2024-07-03 15:18:10,420 	 2. Using the following methods: vcmtools, clomics, phm
2024-07-03 15:18:10,420 	 3. Path to chromatin module peaks: /data/pushkare/Chromatin_modules/2.peaks_in_CMs/peak_files
2024-07-03 15:18:10,420 	 4. Path to overlapping peaks: /data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data
2024-07-03 15:18:10,420 	 5. Use only chromatin modules with cmQTLs? No
2024-07-03 15:18:10,420 	 6. Score type: HM ( Harmonic mean )
2024-07-03 15:18:10,420 	 7. Similarity thresholds in range [0.0, 1.0] with step 0.1
2024-07-03 15:18:10,420 	 8. Overwrite .npy files with scores?: Yes

2024-07-03 15:18:10,420 	 9. Posterior probability threshold for phm: 0.8

2024-07-03 15:18:10,420 Output:
2024-07-03 15:18:10,420 	 1. Output directory for similarity scores:/data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data/HM

2024-07-03 15:18:10,432 Calculating the similarity scores for chromatin modules...
2024-07-03 15:20:51,551 ######################################################
2024-07-03 15:20:51,551 # Chromatin module similarity scores ©Olga Pushkarev #
2024-07-03 15:20:51,551 ######################################################
2024-07-03 15:20:51,551 
List of arguments:

2024-07-03 15:20:51,551 Input:
2024-07-03 15:20:51,551 	 1. Input dataset: test_data
2024-07-03 15:20:51,551 	 2. Using the following methods: vcmtools, clomics, phm
2024-07-03 15:20:51,551 	 3. Path to chromatin module peaks: /data/pushkare/Chromatin_modules/2.peaks_in_CMs/peak_files
2024-07-03 15:20:51,552 	 4. Path to overlapping peaks: /data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data
2024-07-03 15:20:51,552 	 5. Use only chromatin modules with cmQTLs? No
2024-07-03 15:20:51,552 	 6. Score type: HM ( Harmonic mean )
2024-07-03 15:20:51,552 	 7. Similarity thresholds in range [0.0, 1.0] with step 0.1
2024-07-03 15:20:51,552 	 8. Overwrite .npy files with scores?: Yes

2024-07-03 15:20:51,552 	 9. Posterior probability threshold for phm: 0.8

2024-07-03 15:20:51,552 Output:
2024-07-03 15:20:51,552 	 1. Output directory for similarity scores:/data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data/HM

2024-07-03 15:20:51,564 Calculating the similarity scores for chromatin modules...
2024-07-03 15:23:21,903 ######################################################
2024-07-03 15:23:21,903 # Chromatin module similarity scores ©Olga Pushkarev #
2024-07-03 15:23:21,903 ######################################################
2024-07-03 15:23:21,903 
List of arguments:

2024-07-03 15:23:21,903 Input:
2024-07-03 15:23:21,903 	 1. Input dataset: test_data
2024-07-03 15:23:21,903 	 2. Using the following methods: vcmtools, clomics, phm
2024-07-03 15:23:21,903 	 3. Path to chromatin module peaks: /data/pushkare/Chromatin_modules/2.peaks_in_CMs/peak_files
2024-07-03 15:23:21,903 	 4. Path to overlapping peaks: /data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data
2024-07-03 15:23:21,903 	 5. Use only chromatin modules with cmQTLs? No
2024-07-03 15:23:21,903 	 6. Score type: HM ( Harmonic mean )
2024-07-03 15:23:21,903 	 7. Similarity thresholds in range [0.0, 1.0] with step 0.1
2024-07-03 15:23:21,903 	 8. Overwrite .npy files with scores?: Yes

2024-07-03 15:23:21,903 	 9. Posterior probability threshold for phm: 0.8

2024-07-03 15:23:21,903 Output:
2024-07-03 15:23:21,903 	 1. Output directory for similarity scores:/data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data/HM

2024-07-03 15:23:21,915 Calculating the similarity scores for chromatin modules...
2024-07-03 16:07:31,334 ######################################################
2024-07-03 16:07:31,334 # Chromatin module similarity scores ©Olga Pushkarev #
2024-07-03 16:07:31,334 ######################################################
2024-07-03 16:07:31,334 
List of arguments:

2024-07-03 16:07:31,334 Input:
2024-07-03 16:07:31,334 	 1. Input dataset: test_data
2024-07-03 16:07:31,334 	 2. Using the following methods: vcmtools, clomics, phm
2024-07-03 16:07:31,334 	 3. Path to chromatin module peaks: /data/pushkare/Chromatin_modules/2.peaks_in_CMs/peak_files
2024-07-03 16:07:31,334 	 4. Path to overlapping peaks: /data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data
2024-07-03 16:07:31,334 	 5. Use only chromatin modules with cmQTLs? No
2024-07-03 16:07:31,334 	 6. Score type: HM ( Harmonic mean )
2024-07-03 16:07:31,334 	 7. Similarity thresholds in range [0.0, 1.0] with step 0.1
2024-07-03 16:07:31,334 	 8. Overwrite .npy files with scores?: Yes

2024-07-03 16:07:31,334 	 9. Posterior probability threshold for phm: 0.8

2024-07-03 16:07:31,334 Output:
2024-07-03 16:07:31,334 	 1. Output directory for similarity scores:/data/pushkare/Chromatin_modules/6.compare_CMs/compare_methods_per_cell_type/test_data/HM

2024-07-03 16:07:31,349 Calculating the similarity scores for chromatin modules...
