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  • src
    • scATAcat package
scATAcat Documentation
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src

  • scATAcat package
    • Submodules
    • scATAcat.bulk_data_functions module
      • generate_bulk_AnnData()
      • generate_bulk_sparse_AnnData()
      • preprocess_bulk_adata()
    • scATAcat.helper_functions module
      • add_binary_layer()
      • apply_PCA()
      • apply_TFIDF_sparse()
      • overlap_vars()
      • preproces_sc_matrix()
      • preprocessing_libsize_norm_log2()
      • preprocessing_standardization()
      • sparse_mean_variance_axis()
      • subset_adata_obs()
      • subset_adata_vars()
    • scATAcat.plot_functions module
      • cell_feature_statistics()
      • plot_cell_statistics()
      • plot_feature_statistics()
      • plot_gene_activity_of_UMAP()
      • plot_pca_dist_cent_heatmap()
      • plot_pca_dist_heatmap()
      • projection()
    • scATAcat.pseudobulk_functions module
      • get_closest_prototype_to_pseudobulk()
      • get_closest_pseubulk_to_prototype()
      • get_pseudobulk_matrix()
      • get_pseudobulk_matrix_ext()
      • get_pseudobulk_to_prototype_distance()
    • Module contents
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