Example dataset

Download example files

You can download the example FASTA and FASTQ files in several ways, according to your preference.

Download from the URL

Click each of these links to download the example FASTQ files, then save them to a location of your choice:

If file appears in the web browser but does not download automatically, then right-click on the page and process “Save Page As…”.

Download from GitHub

In a web browser, navigate to https://github.com/rouskinlab/seismic-rna/tree/main/example. From that page, click on each of the following files:

  • sars2.fa

  • sars2-fse_R1.fq.gz

  • sars2-fse_R2.fq.gz

On each page, click the button labeled “Download raw file” near the upper right corner of the page.

Download using wget

Open a Terminal, navigate to the directory into which you want to save the files, and type the following commands:

wget https://github.com/rouskinlab/seismic-rna/raw/main/example/sars2.fa
wget https://github.com/rouskinlab/seismic-rna/raw/main/example/sars2-fse_R1.fq.gz
wget https://github.com/rouskinlab/seismic-rna/raw/main/example/sars2-fse_R2.fq.gz

Download using curl

Open a Terminal, navigate to the directory into which you want to save the files, and type the following commands:

curl -L https://github.com/rouskinlab/seismic-rna/raw/main/example/sars2.fa > sars2.fa
curl -L https://github.com/rouskinlab/seismic-rna/raw/main/example/sars2-fse_R1.fq.gz > sars2-fse_R1.fq.gz
curl -L https://github.com/rouskinlab/seismic-rna/raw/main/example/sars2-fse_R2.fq.gz > sars2-fse_R2.fq.gz

Verify the downloaded files

Verifying the integrity of any files you download is always a good idea. This process checks whether the files were corrupted during the download and slightly reduces the risk of inadvertently opening malware (but it cannot not confirm that the file is authentic). Checksum results are given for each file using both the MD5 and SHA-256 algorithms.

Note

If you obtain checksums different than those in the tables below, then delete the files and please create a new issue on GitHub at https://github.com/rouskinlab/seismic-rna/issues.

Compute MD5 checksums

Compute MD5 checksums using the following commands:

md5 sars2.fa
md5 sars2-fse_R1.fq.gz
md5 sars2-fse_R2.fq.gz

These commands should produce the following checksums:

File

MD5 Checksum

sars2.fa

aff9a30f5949c7a8b8ae437922c39f90

sars2-fse_R1.fq.gz

94ba454827b5763892dd244fe897a406

sars2-fse_R2.fq.gz

58ff4df2fd5fb93e1407328a4dcd8f95

Compute SHA-256 checksums

Compute SHA-256 checksums using the following commands:

shasum -a 256 sars2.fa
shasum -a 256 sars2-fse_R1.fq.gz
shasum -a 256 sars2-fse_R2.fq.gz

These commands should produce the following checksums:

File

SHA-256 Checksum

sars2.fa

1f0277918d971ba2b4096b218ff91514793684a9bc60395c56c7cfcc837b45c4

sars2-fse_R1.fq.gz

6f2453c2da1733109a9df9c6a9110adbd6cac82fa6fb01f3589cf8720eb65514

sars2-fse_R2.fq.gz

9fce126e9740004b832170a288e83be45d702667c62e9bf18712a76464a16b4d