#
# This matrix was created by Todd Lowe   12/10/92
#
# Uses ambiguous nucleotide codes, probabilities rounded to
#  nearest integer
#
# Lowest score = -3, Highest score = 2
#
    A   T   G   C   S   W   R   Y   K   M   B   V   H   D   N   U
A   2  -3  -3  -3  -3   1   1  -3  -3   1  -3  -1  -1  -1  -2  -3
T  -3   2  -3  -3  -3   1  -3   1   1  -3  -1  -3  -1  -1  -2   2
G  -3  -3   2  -3   1  -3   1  -3   1  -3  -1  -1  -3  -1  -2  -3
C  -3  -3  -3   2   1  -3  -3   1  -3   1  -1  -1  -1  -3  -2  -3
S  -3  -3   1   1  -1  -3  -2  -2  -2  -2  -1  -1  -3  -3  -1  -3
W   1   1  -3  -3  -3  -1  -2  -2  -2  -2  -3  -3  -1  -1  -1   1
R   1  -3   1  -3  -2  -2  -1  -3  -2  -2  -3  -1  -3  -1  -1  -3
Y  -3   1  -3   1  -2  -2  -3  -1  -2  -2  -1  -3  -1  -3  -1   1
K  -3   1   1  -3  -2  -2  -2  -2  -1  -3  -1  -3  -3  -1  -1   1
M   1  -3  -3   1  -2  -2  -2  -2  -3  -1  -3  -1  -1  -3  -1  -3
B  -3  -1  -1  -1  -1  -3  -3  -1  -1  -3  -1  -2  -2  -2  -1  -1
V  -1  -3  -1  -1  -1  -3  -1  -3  -3  -1  -2  -1  -2  -2  -1  -3
H  -1  -1  -3  -1  -3  -1  -3  -1  -3  -1  -2  -2  -1  -2  -1  -1
D  -1  -1  -1  -3  -3  -1  -1  -3  -1  -3  -2  -2  -2  -1  -1  -1
N  -2  -2  -2  -2  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -1  -2
U  -3   2  -3  -3  -3   1  -3   1   1  -3  -1  -3  -1  -1  -2   2
