Help |
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Save the source code files of a drake example. |
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List the names of all the drake examples. |
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Drake is a pipeline toolkit (https://github.com/pditommaso/awesome-pipeline) and a scalable, R-focused solution for reproducibility and high-performance computing. |
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Output a random tip about drake. |
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Load the basic example from |
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Basic |
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Run your project (build the outdated targets). |
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Create the internal runtime parameter list
used internally in |
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Build/process a single target or import. |
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Just make the imports. |
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Just build the targets. |
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Run |
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Workflow plan data frames |
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Create a workflow plan data frame
for the |
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Declare the file inputs of a workflow plan command. |
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Declare the file outputs of a workflow plan command. |
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Tell |
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Declare the |
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Ignore components of commands and imported functions. |
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Show the analysis wildcard
used in |
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Show the dataset wildcard
used in |
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Use wildcard templating to create a workflow plan data frame from a template data frame. |
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Create replicates of targets. |
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Write commands to combine several targets into one or more overarching targets. |
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Write commands to reduce several targets down to one. |
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Generate a workflow plan data frame to analyze multiple datasets using multiple methods of analysis. |
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Generate a workflow plan data frame for summarizing multiple analyses of multiple datasets multiple ways. |
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Network graphs and visualization |
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Create the |
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Show drake's color palette. |
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Create the underlying node and edge data frames
behind |
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Create the nodes data frame used in the legend
of |
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Prune the dependency network of your project. |
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Render a visualization using the data frames
generated by |
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Show an interactive visual network representation of your drake project. |
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Debugging and testing |
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Check a workflow plan data frame for obvious errors. |
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Return the default trigger. |
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Return the detailed dependency profile of the target. |
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List the dependencies of a function, workflow plan command, or knitr report source file. |
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Get diagnostic metadata on a target. |
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Compute the initial pre-build metadata of a target or import. |
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Find the drake dependencies of a dynamic knitr report target. |
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Reconfigure an old project (built with drake <= 4.4.0) to be compatible with later versions of drake. |
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Report any import objects required by your drake_plan plan but missing from your workspace. |
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List the targets that are out of date. |
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List the targets and imports that are reproducibly tracked. |
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List the available drake triggers. |
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High-performance computing |
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Return the default value of the
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Give the default |
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Show the default |
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Show the default
recipe command for |
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Write the batchtools template file from one of the built-in drake examples. |
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For |
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Suggest an upper bound on the jobs in the next call
to |
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List the targets that will be built in the
first parallelizable stage of the next call to |
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List the types of supported parallel computing in drake. |
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Show how |
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Show the R recipe wildcard
for |
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Write an example |
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Timing |
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List the time it took to build each target/import. |
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Predict the elapsed runtime of the next call to |
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Return a data frame of elapsed build times of the rate-limiting targets of a drake project. |
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Cache usage |
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List all the built targets (non-imports) in the cache. |
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Enumerate cached targets or check if a target is cached. |
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Remove targets/imports from the cache. |
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Get a table that represents the state of the cache. |
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Generate a flat text log file to represent the state of the cache. |
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Do garbage collection on the drake cache. |
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Return the |
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List the targets that failed in the last call
to |
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Search up the file system for the nearest drake cache. |
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Search up the file system for the nearest root path of a drake project. |
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Get the drake cache, optionally searching up the file system. |
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List all the imports in the drake cache. |
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List the targets that either
(1) are currently being built during a |
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Load one or more targets or imports from the drake cache. |
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Get the build progress of your targets
during a |
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Read the cached |
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Read the igraph dependency network
from your last attempted call to |
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Read the workflow plan
from your last attempted call to |
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Read the pseudo-random number generator seed of the project. |
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Read and return a drake target/import from the cache. |
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Try to repair a drake cache that is prone
to throwing |
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Cache configuration |
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List the available hash algorithms for drake caches. |
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List all the |
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Return the file path where the cache is stored, if applicable. |
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For drake caches,
list the |
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Configure the hash algorithms, etc. of a drake cache. |
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Return the default file path of the drake/storr cache. |
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Return the default long hash algorithm for |
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Return the default short hash algorithm for |
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Get the long hash algorithm of a drake cache. |
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Make a new |
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Load an existing drake files system cache if it exists or create a new one otherwise. |
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Get the short hash algorithm of a drake cache. |
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For drake caches,
list the |
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Get the cache at the exact file path specified. |
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Hooks |
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Default |
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A |
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An example |
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An example |
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An example |
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Utilities |
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Put quotes around each element of a character vector. |
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Turn valid expressions into character strings. |
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Remove leading and trailing escaped quotes from character strings. |
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Expose all the imports in a package so |