.travis.yml
bin/compareBamGenotypes.pl
bin/validate_sample_meta.pl
bin/verifyBamHomChk.pl
build/htstools.sh
CHANGES.md
CODE_OF_CONDUCT.md
docs.tar.gz
lib/Sanger/CGP/NgsQc.pm
lib/Sanger/CGP/NgsQc/CompareGenotypes.pm
lib/Sanger/CGP/NgsQc/ValidateSampleMetaAndBamHeader.pm
lib/Sanger/CGP/NgsQc/VerifyBamId.pm
LICENCE.TXT
Makefile.PL
MANIFEST			This list of files
MANIFEST.SKIP
prerelease.sh
README.md
setup.sh
share/bam_headers/GRCh37d5.header
share/genotype/gender.tsv
share/genotype/general.tsv
share/SNP6/GRCh37.vcf.gz
t/1_pm_compile.t
t/2_pl_compile.t
t/QCvalidateSampleMeta.t
t/TestData/sampleValidation/test-meta.tsv
t/TestData/sampleValidation/test-meta.xls
t/TestData/sampleValidation/test-meta.xlsx
t/TestData/sampleValidation/test-meta_dup_bamPath.tsv
t/TestData/sampleValidation/test-meta_dup_donorIDcolumn.tsv
t/TestData/sampleValidation/test-meta_dup_sampleID.tsv
t/TestData/sampleValidation/test-meta_invalid_bam.tsv
t/TestData/sampleValidation/test-meta_invalid_isNormalColumn.tsv
t/TestData/sampleValidation/test-meta_no_header.tsv
t/TestData/sampleValidation/test-meta_no_header_1columnShort.tsv
t/TestData/sampleValidation/test-meta_no_sampleIDcolumn.tsv
t/TestData/sampleValidation/test_sample.1.bam
t/TestData/sampleValidation/test_sample.2.bam
t/TestData/sampleValidation/test_sample.3.bam
