Input options: 
*********************
*   defects section
*********************
------------------
coord_type:
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    fractional
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defects:
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    {'vac2': {'threshold': 0.0001, 'charge': [0], 'coord_type': 'fractional', 'subdefect_1': {'symbol': 'Al', 'type': 'vacancy', 'coordinates': array([ 0.5,  0.5,  0. ])}}, 'vac1': {'threshold': 0.0001, 'charge': [0], 'coord_type': 'fractional', 'subdefect_1': {'symbol': 'Al', 'type': 'vacancy', 'coordinates': array([ 0.,  0.,  0.])}}}
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num_defects:
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    2
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*   ingredients section
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global:
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    {'mast_exec': '//share/apps/vasp5.2_cNEB', 'ibrion': '2', 'mast_nodes': '1', 'mast_write_method': 'write_singlerun', 'mast_complete_method': 'complete_singlerun', 'mast_xc': 'PW91', 'isif': '2', 'mast_ready_method': 'ready_singlerun', 'mast_queue': 'default', 'lcharg': 'False', 'mast_run_method': 'run_singlerun', 'prec': 'Accurate', 'mast_kpoints': [2, 2, 2, 'M'], 'mast_update_children_method': 'give_structure', 'mast_multiplyencut': '1.5', 'mast_program': 'vasp', 'mast_ppn': '1', 'ismear': '1', 'lwave': 'False', 'sigma': '0.2', 'nsw': '191'}
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inducedefect:
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    {'mast_ready_method': 'ready_defect', 'mast_run_method': 'run_defect', 'mast_write_method': 'no_setup', 'mast_complete_method': 'complete_structure'}
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neb_to_neb:
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    {'mast_nodes': '3', 'mast_write_method': 'write_neb', 'lclimb': 'True', 'mast_update_children_method': 'give_neb_structures_to_neb', 'spring': '-5', 'images': '3', 'ibrion': '1', 'potim': '0.5', 'mast_kpoints': [1, 1, 1, 'G'], 'mast_coordinates': ['/home/tam/tammast/test/inputtest_notupdated/nebim1poscar', '/home/tam/tammast/test/inputtest_notupdated/nebim2poscar', '/home/tam/tammast/test/inputtest_notupdated/nebim3poscar']}
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neb_to_nebstat:
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    {'mast_nodes': '3', 'mast_write_method': 'write_neb', 'lclimb': 'True', 'mast_update_children_method': 'give_neb_structures_to_neb', 'spring': '-5', 'ibrion': '1', 'images': '3', 'potim': '0.5'}
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nebstat_to_nebphonon:
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    {'mast_write_method': 'write_neb_subfolders', 'mast_complete_method': 'complete_neb_subfolders', 'mast_ready_method': 'ready_neb_subfolders', 'mast_run_method': 'run_neb_subfolders', 'mast_update_children_method': 'give_saddle_structure', 'ibrion': '-1', 'nsw': '0'}
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phonon_to_phononparse:
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    {'mast_write_method': 'write_phonon_multiple', 'mast_complete_method': 'complete_subfolders', 'mast_ready_method': 'ready_subfolders', 'mast_run_method': 'run_subfolders', 'mast_update_children_method': 'give_phonon_multiple_forces_and_displacements', 'icharg': '1', 'ibrion': '5', 'nfree': '2', 'potim': '0.01', 'istart': '1'}
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phononparse:
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    {'lnosym': '.True.', 'mast_exec': '$MAST_INSTALL_PATH/bin/phon_henry', 'ldrift': '.False.', 'temperature': '273', 'mast_multiplyencut': '1.25', 'lfree': '.True.', 'nd': '3', 'qa': '11', 'qc': '11', 'qb': '11', 'mast_program': 'phon', 'ptemp': '10 110', 'lsuper': '.False.'}
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singlerun_to_neb:
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    {'mast_update_children_method': 'give_structure_and_energy_to_neb', 'lwave': 'True', 'ibrion': '-1', 'lcharge': 'True', 'nsw': '0'}
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singlerun_to_phonon:
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    {'mast_multiplyencut': '1.25', 'lcharge': 'True', 'mast_update_children_method': 'give_structure_and_restart_files', 'ibrion': '-1', 'lwave': 'True', 'nsw': '0'}
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singlerun_vac1:
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    {'mast_coordinates': ['/home/tam/tammast/test/inputtest_notupdated/vac1poscar']}
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singlerun_vac2:
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    {'mast_coordinates': ['/home/tam/tammast/test/inputtest_notupdated/vac2poscar']}
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volrelax_to_singlerun:
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    {'isif': '3'}
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*   mast section
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system_name:
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    smalldemo
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*   neb section
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images:
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    3
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neblines:
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    {'vac1-vac2': [['Al', ' 0.5 0.5 0.0', ' 0.0 0.0 0.0']]}
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*   phonon section
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phonon:
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    {'perfect': {'phonon_center_site': '0.5 0.5 0', 'phonon_center_radius': '1'}, 'vac2': {'phonon_center_site': '0.0 0.0 0', 'phonon_center_radius': '1'}, 'vac1': {'phonon_center_site': '0.5 0.5 0', 'phonon_center_radius': '1'}, 'vac1-vac2': {'phonon_center_site': '0.25 0.25 0', 'phonon_center_radius': '1'}}
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*   recipe section
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recipe_file:
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    /home/tam/tammast/recipe_templates/treetest.txt
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*   structure section
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atom_list:
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    ['Al', 'Al', 'Al', 'Al']
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coord_type:
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    fractional
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coordinates:
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    [[ 0.   0.   0. ]
 [ 0.5  0.5  0. ]
 [ 0.   0.5  0.5]
 [ 0.5  0.   0.5]]
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element_map:
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    {'X1': 'Al'}
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lattice:
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    [[ 3.5  0.   0. ]
 [ 0.   3.5  0. ]
 [ 0.   0.   3.5]]
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posfile:
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    None
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primitive:
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    False
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spacegroup:
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    None
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structure:
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    Structure Summary (Al4)
Reduced Formula: Al
abc   :   3.500000   3.500000   3.500000
angles:  90.000000  90.000000  90.000000
Sites (4)
1 Al     0.000000     0.000000     0.000000
2 Al     0.500000     0.500000     0.000000
3 Al     0.000000     0.500000     0.500000
4 Al     0.500000     0.000000     0.500000
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symmetry_only:
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    False
