in start_from_input_options
Setting up the recipe based on /home/tam/tammast/SCRATCH/test_small_new_template_20130821T124539_personal_recipe.txt
GRJ DEBUG: RecipeSetup.create_recipe_plan
Indent:  0
[1, 'perfect_opt1', 'volrelax_to_singlerun']
Indent:  1
[2, 'perfect_opt2', 'volrelax_to_singlerun']
Indent:  2
[3, 'perfect_stat', 'singlerun_to_phonon']
[6, 'inducedefect_vac1', 'induce_defect']
[12, 'inducedefect_vac2', 'induce_defect']
Indent:  3
[4, 'phonon_perfect', 'phonon_to_phononparse']
[7, 'defect_vac1_opt1', 'default']
[13, 'defect_vac2_opt1', 'default']
Indent:  4
[5, 'phonon_perfect_parse', 'phononparse']
[8, 'defect_vac1_opt2', 'default']
[14, 'defect_vac2_opt2', 'default']
Indent:  5
[9, 'defect_vac1_stat', 'singlerun_to_phonon']
[15, 'defect_vac2_stat', 'singlerun_to_phonon']
Indent:  6
[10, 'phonon_vac1', 'phonon_to_phononparse']
[16, 'phonon_vac2', 'phonon_to_phononparse']
Indent:  7
[11, 'phonon_vac1_parse', 'phononparse']
[17, 'phonon_vac2_parse', 'phononparse']
Indent:  0
[1, 'defect_vac1_stat', 'singlerun_to_neb']
[1, 'defect_vac2_stat', 'singlerun_to_neb']
Indent:  1
[2, 'neb_vac1-vac2_opt1', 'neb_to_neb']
[7, 'neb_vac1-vac2_opt2', 'neb_to_nebstat']
[8, 'neb_vac1-vac2_stat', 'nebstat_to_nebphonon']
Indent:  2
[3, 'neb_vac1-vac2_opt2', 'neb_to_nebstat']
Indent:  3
[4, 'neb_vac1-vac2_stat', 'nebstat_to_nebphonon']
Indent:  4
[5, 'phonon_vac1-vac2', 'phonon_to_phononparse']
Indent:  5
[6, 'phonon_vac1-vac2_parse', 'phononparse']
How-to-update-children tree: 
defect_vac1_opt1 : {'defect_vac1_opt2': 'default'}
defect_vac1_opt2 : {'defect_vac1_stat': 'default'}
defect_vac1_stat : {'neb_vac1-vac2_opt1': 'singlerun_to_neb', 'neb_vac1-vac2_opt2': 'singlerun_to_neb', 'neb_vac1-vac2_stat': 'singlerun_to_neb', 'phonon_vac1': 'singlerun_to_phonon'}
defect_vac2_opt1 : {'defect_vac2_opt2': 'default'}
defect_vac2_opt2 : {'defect_vac2_stat': 'default'}
defect_vac2_stat : {'neb_vac1-vac2_opt2': 'singlerun_to_neb', 'phonon_vac2': 'singlerun_to_phonon', 'neb_vac1-vac2_stat': 'singlerun_to_neb', 'neb_vac1-vac2_opt1': 'singlerun_to_neb'}
inducedefect_vac1 : {'defect_vac1_opt1': 'induce_defect'}
inducedefect_vac2 : {'defect_vac2_opt1': 'induce_defect'}
neb_vac1-vac2_opt1 : {'neb_vac1-vac2_opt2': 'neb_to_neb'}
neb_vac1-vac2_opt2 : {'neb_vac1-vac2_stat': 'neb_to_nebstat'}
neb_vac1-vac2_stat : {'phonon_vac1-vac2': 'nebstat_to_nebphonon'}
perfect_opt1 : {'perfect_opt2': 'volrelax_to_singlerun'}
perfect_opt2 : {'perfect_stat': 'volrelax_to_singlerun', 'inducedefect_vac1': 'volrelax_to_singlerun', 'inducedefect_vac2': 'volrelax_to_singlerun'}
perfect_stat : {'phonon_perfect': 'singlerun_to_phonon'}
phonon_perfect : {'phonon_perfect_parse': 'phonon_to_phononparse'}
phonon_perfect_parse : {}
phonon_vac1 : {'phonon_vac1_parse': 'phonon_to_phononparse'}
phonon_vac1-vac2 : {'phonon_vac1-vac2_parse': 'phonon_to_phononparse'}
phonon_vac1-vac2_parse : {}
phonon_vac1_parse : {}
phonon_vac2 : {'phonon_vac2_parse': 'phonon_to_phononparse'}
phonon_vac2_parse : {}
Parents-to-check tree: 
defect_vac1_opt1 : ['inducedefect_vac1']
defect_vac1_opt2 : ['defect_vac1_opt1']
defect_vac1_stat : ['defect_vac1_opt2']
defect_vac2_opt1 : ['inducedefect_vac2']
defect_vac2_opt2 : ['defect_vac2_opt1']
defect_vac2_stat : ['defect_vac2_opt2']
inducedefect_vac1 : ['perfect_opt2']
inducedefect_vac2 : ['perfect_opt2']
neb_vac1-vac2_opt1 : ['defect_vac1_stat', 'defect_vac2_stat']
neb_vac1-vac2_opt2 : ['defect_vac1_stat', 'defect_vac2_stat', 'neb_vac1-vac2_opt1']
neb_vac1-vac2_stat : ['defect_vac1_stat', 'defect_vac2_stat', 'neb_vac1-vac2_opt2']
perfect_opt1 : []
perfect_opt2 : ['perfect_opt1']
perfect_stat : ['perfect_opt2']
phonon_perfect : ['perfect_stat']
phonon_perfect_parse : ['phonon_perfect']
phonon_vac1 : ['defect_vac1_stat']
phonon_vac1-vac2 : ['neb_vac1-vac2_stat']
phonon_vac1-vac2_parse : ['phonon_vac1-vac2']
phonon_vac1_parse : ['phonon_vac1']
phonon_vac2 : ['defect_vac2_stat']
phonon_vac2_parse : ['phonon_vac2']
How-to-run tree: 
defect_vac1_opt1 : default
defect_vac1_opt2 : default
defect_vac1_stat : singlerun_to_neb
defect_vac2_opt1 : default
defect_vac2_opt2 : default
defect_vac2_stat : singlerun_to_neb
inducedefect_vac1 : induce_defect
inducedefect_vac2 : induce_defect
neb_vac1-vac2_opt1 : neb_to_neb
neb_vac1-vac2_opt2 : neb_to_nebstat
neb_vac1-vac2_stat : nebstat_to_nebphonon
perfect_opt1 : volrelax_to_singlerun
perfect_opt2 : volrelax_to_singlerun
perfect_stat : singlerun_to_phonon
phonon_perfect : phonon_to_phononparse
phonon_perfect_parse : phononparse
phonon_vac1 : phonon_to_phononparse
phonon_vac1-vac2 : phonon_to_phononparse
phonon_vac1-vac2_parse : phononparse
phonon_vac1_parse : phononparse
phonon_vac2 : phonon_to_phononparse
phonon_vac2_parse : phononparse

Initializing ingredient perfect_opt2 of type volrelax_to_singlerun
Copying over defaults from ingredients_global for ingredient volrelax_to_singlerun.

Initializing ingredient perfect_opt1 of type volrelax_to_singlerun
Copying over defaults from ingredients_global for ingredient volrelax_to_singlerun.

Initializing ingredient phonon_vac1-vac2 of type phonon_to_phononparse
Copying over defaults from ingredients_global for ingredient phonon_to_phononparse.

Initializing ingredient phonon_perfect of type phonon_to_phononparse
Copying over defaults from ingredients_global for ingredient phonon_to_phononparse.

Initializing ingredient defect_vac1_opt1 of type default
Ingredient type default has not be specified in the input file.
Using defaults from ingredients_global.
vac2 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac1_opt1
vac1 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac1_opt1

Initializing ingredient defect_vac1_opt2 of type default
Copying over defaults from ingredients_global for ingredient default.
vac2 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac1_opt2
vac1 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac1_opt2

Initializing ingredient inducedefect_vac1 of type induce_defect
Copying over defaults from ingredients_global for ingredient induce_defect.
vac2 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/inducedefect_vac1
vac1 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/inducedefect_vac1

Initializing ingredient inducedefect_vac2 of type induce_defect
Copying over defaults from ingredients_global for ingredient induce_defect.
vac2 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/inducedefect_vac2
vac1 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/inducedefect_vac2

Initializing ingredient phonon_vac1_parse of type phononparse
Copying over defaults from ingredients_global for ingredient phononparse.

Initializing ingredient phonon_vac1-vac2_parse of type phononparse
Copying over defaults from ingredients_global for ingredient phononparse.

Initializing ingredient phonon_perfect_parse of type phononparse
Copying over defaults from ingredients_global for ingredient phononparse.

Initializing ingredient defect_vac1_stat of type singlerun_to_neb
Copying over defaults from ingredients_global for ingredient singlerun_to_neb.
vac2 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac1_stat
vac1 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac1_stat

Initializing ingredient phonon_vac2 of type phonon_to_phononparse
Copying over defaults from ingredients_global for ingredient phonon_to_phononparse.

Initializing ingredient phonon_vac1 of type phonon_to_phononparse
Copying over defaults from ingredients_global for ingredient phonon_to_phononparse.

Initializing ingredient perfect_stat of type singlerun_to_phonon
Copying over defaults from ingredients_global for ingredient singlerun_to_phonon.

Initializing ingredient neb_vac1-vac2_opt2 of type neb_to_nebstat
Copying over defaults from ingredients_global for ingredient neb_to_nebstat.

Initializing ingredient defect_vac2_opt1 of type default
Copying over defaults from ingredients_global for ingredient default.
vac2 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac2_opt1
vac1 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac2_opt1

Initializing ingredient defect_vac2_opt2 of type default
Copying over defaults from ingredients_global for ingredient default.
vac2 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac2_opt2
vac1 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac2_opt2

Initializing ingredient neb_vac1-vac2_opt1 of type neb_to_neb
Copying over defaults from ingredients_global for ingredient neb_to_neb.

Initializing ingredient phonon_vac2_parse of type phononparse
Copying over defaults from ingredients_global for ingredient phononparse.

Initializing ingredient neb_vac1-vac2_stat of type nebstat_to_nebphonon
Copying over defaults from ingredients_global for ingredient nebstat_to_nebphonon.

Initializing ingredient defect_vac2_stat of type singlerun_to_neb
Copying over defaults from ingredients_global for ingredient singlerun_to_neb.
vac2 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac2_stat
vac1 /home/tam/tammast/SCRATCH/smalldemo_Al_Al_None_test_small_new_template_20130821T124539/defect_vac2_stat
