Differential expression results tables — res_tables • bcbioRnaseq

Differential expression results tables

res_tables(bcbio, res, lfc = 0, write_csv = TRUE)

Arguments

bcbio: bcbio list object
res: DESeqResults object
lfc: Log fold change ratio (base 2) cutoff. Does not apply to statistical hypothesis testing, only gene filtering in the results tables. See ?DESeq2::results for additional information about using lfcThreshold and altHypothesis to set an alternative hypothesis based on expected fold changes.
write_csv: Write CSV files

Value

Results list

Examples

## Not run: ------------------------------------
# res_tables(bcbio, res, lfc = 0.25)
## ---------------------------------------------