Pool DESeqDataSet counts for technical replicates

Extract lane split technical replicate counts from a DESeqDataSet object, perform rowSums, and create a new DESeqDataSet using DESeqDataSetFromMatrix()

pool_lane_split_dds(bcbio, dds, save_counts = TRUE)

Arguments

bcbio

bcbio list object

dds

DESeqDataSet object

save_counts

Whether to save and export counts

Value

DESeqDataSet object using pooled technical replicates