Differentially expressed gene (DEG) tables — deg_tables • bcbioRnaseq

Differentially expressed gene (DEG) tables

deg_tables(bcbio, res, lfc = 0, write_csv = TRUE)

Arguments

bcbio: bcbio list object
lfc: Log fold change ratio (base 2) cutoff. Does not apply to statistical hypothesis testing, only gene filtering in the results tables. See ?DESeq2::results for additional information about using lfcThreshold and altHypothesis to set an alternative hypothesis based on expected fold changes.
write_csv: Write CSV files
dds: DESeqDataSet object

Value

Results list

Examples

## Not run: ------------------------------------
# deg_tables(bcbio, res, lfc = 0.25)
## ---------------------------------------------