Correlation matrix heatmap

correlation_heatmap(bcbio, counts, method = "pearson", ...)

Arguments

bcbio

bcbio list object

counts

RNA-Seq counts as DESeqDataSet or DESeqTransform object. If input as DESeqDataSet, an rlog transformation will be applied.

method

Correlation coefficient (or covariance) to be computed. Defaults to pearson but spearman can also be used.

...

Optional passthrough to pheatmap()

Value

Heatmap