# Generated by roxygen2: do not edit by hand

export("%>%")
export(alpha_summary)
export(check_bcbio)
export(correlation_heatmap)
export(create_local_project)
export(deg_heatmap)
export(ensembl_annotations)
export(import_counts)
export(import_file)
export(import_metadata)
export(import_summary)
export(kable)
export(load_bcbio_run)
export(melt_log10)
export(multiple_kables)
export(plot_count_density)
export(plot_counts_per_gene)
export(plot_deseq_pca)
export(plot_exonic_mapping_rate)
export(plot_gender_markers)
export(plot_gene)
export(plot_gene_detection_saturation)
export(plot_genes_detected)
export(plot_intronic_mapping_rate)
export(plot_ma)
export(plot_mapped_reads)
export(plot_mapping_rate)
export(plot_rrna_mapping_rate)
export(plot_total_reads)
export(plot_volcano)
export(pool_lane_split_counts)
export(pool_lane_split_dds)
export(res_tables)
export(run_david)
export(tmm_normalize)
export(top_tables)
export(tpm)
import(DESeq2)
import(SummarizedExperiment)
import(dplyr)
import(ggplot2)
import(ggrepel)
import(pheatmap)
import(readr)
import(reshape2)
import(stringr)
import(tibble)
import(tidyr)
import(tximport)
importFrom(CHBUtils,volcano_density_plot)
importFrom(RDAVIDWebService,DAVIDWebService)
importFrom(RDAVIDWebService,addList)
importFrom(RDAVIDWebService,getAnnotationSummary)
importFrom(RDAVIDWebService,getClusterReport)
importFrom(RDAVIDWebService,getClusterReportFile)
importFrom(RDAVIDWebService,getFunctionalAnnotationChart)
importFrom(RDAVIDWebService,getFunctionalAnnotationChartFile)
importFrom(RDAVIDWebService,getFunctionalAnnotationTable)
importFrom(RDAVIDWebService,getFunctionalAnnotationTableFile)
importFrom(RDAVIDWebService,getGeneCategoriesReport)
importFrom(RDAVIDWebService,getGeneListReport)
importFrom(RDAVIDWebService,getGeneListReportFile)
importFrom(RDAVIDWebService,setTimeOut)
importFrom(S4Vectors,mcols)
importFrom(basejump,kable)
importFrom(basejump,setNamesSnake)
importFrom(basejump,setRownames)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useMart)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(knitr,asis_output)
importFrom(magrittr,"%>%")
importFrom(magrittr,set_names)
importFrom(stats,cor)
importFrom(stats,na.omit)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,sessionInfo)
importFrom(utils,write.csv)
