Package: bcbioRnaseq
Title: RNA-Seq Utilities
Version: 0.0.6
Date: 2017-04-06
Authors@R: c(
    person("Rory", "Kirchner",
           email = "roryk@alum.mit.edu",
           role = c("aut", "cre")),
    person("Michael", "Steinbaugh",
           email = "mike@steinbaugh.com",
           role = "aut"))
Description: Functions for processing bcbio-nextgen RNA-Seq results.
biocViews:
    DifferentialExpression,
    GeneExpression,
    ReportWriting,
    RNASeq,
    Visualization
URL: https://bcbio-nextgen.readthedocs.io, https://github.com/roryk/bcbioRnaseq
BugReports: https://github.com/roryk/bcbioRnaseq/issues
Depends: R (>= 3.3.2)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports:
    basejump,
    biomaRt,
    CHBUtils,
    DESeq2,
    dplyr,
    edgeR,
    ggplot2,
    ggrepel,
    magrittr,
    pheatmap,
    RDAVIDWebService,
    readr,
    reshape2,
    stats,
    stringr,
    S4Vectors,
    SummarizedExperiment,
    tibble,
    tidyr,
    tximport,
    utils
Remotes:
    hbc/CHBUtils,
    steinbaugh/basejump
RoxygenNote: 6.0.1
