Plot Dispersion Estimates

Method support for plotting the dispersion of counts stored in a bcbioRNASeq object. Here we're using the internally stored DESeqDataSet, which already has method support for plotting dispersion, provided by the DESeq2 package.

# S4 method for bcbioRNASeq
plotDispEsts(object, ...)

Arguments

object	bcbioRNASeq.
...	Passthrough arguments to DESeq2::plotDispEsts().

Value

ggplot.

See also

• DESeq2::plotDispEsts().

• getMethod("plotDispEsts", "DESeqDataSet").

Other Differential Expression Utilities: alphaSummary, plotMeanSD

Examples

plotDispEsts(bcb)

# NOT RUN {
plotDispEsts(
    bcb,
    genecol = "gray",
    fitcol = "purple",
    finalcol = "orange")
# }