Sample Metrics
# S4 method for bcbioRNASeq metrics(object)
| object | Object. |
|---|
data.frame.
metrics(bcb) %>% str()#> 'data.frame': 4 obs. of 21 variables: #> $ sampleID : Factor w/ 4 levels "group1_1","group1_2",..: 1 2 3 4 #> $ sampleName : Factor w/ 4 levels "group1_1","group1_2",..: 1 2 3 4 #> $ description : Factor w/ 4 levels "group1_1","group1_2",..: 1 2 3 4 #> $ xGC : num 48 48 47 48 #> $ x53Bias : num 1.01 1.04 1 0.98 #> $ averageInsertSize : num 0 0 0 0 #> $ duplicates : num 0 0 0 0 #> $ duplicationRateOfMapped : num 0.557 0.589 0.577 0.583 #> $ exonicRate : num 0.859 0.882 0.863 0.871 #> $ intergenicRate : num 0.0663 0.0599 0.0661 0.0635 #> $ intronicRate : num 0.0747 0.0581 0.0707 0.0652 #> $ mappedPairedReads : num 0 0 0 0 #> $ mappedReads : num 22062337 25852621 25172084 25100941 #> $ name : Factor w/ 4 levels "ctrl_f_1","ctrl_f_4",..: 1 2 3 4 #> $ qualityFormat : Factor w/ 1 level "standard": 1 1 1 1 #> $ sequenceLength : Factor w/ 1 level "25-75": 1 1 1 1 #> $ sequencesFlaggedAsPoorQuality: num 0 0 0 0 #> $ totalReads : num 22339941 26168288 25490090 25399483 #> $ rrna : num 42219 48275 38894 40832 #> $ rrnaRate : num 0.00207 0.00197 0.00167 0.00174 #> $ group : Factor w/ 2 levels "ctrl","ko": 1 1 2 2