Ensembl Annotations
# S4 method for bcbioRNASeq annotable(object)
| object | Object. |
|---|
data.frame
annotable(bcb) %>% str()#> 'data.frame': 505 obs. of 10 variables: #> $ ensgene : chr "ENSMUSG00000002459" "ENSMUSG00000004768" "ENSMUSG00000005886" "ENSMUSG00000016918" ... #> $ symbol : chr "Rgs20" "Rab23" "Ncoa2" "Sulf1" ... #> $ description : chr "regulator of G-protein signaling 20 [Source:MGI Symbol;Acc:MGI:1929866]" "RAB23, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:99833]" "nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]" "sulfatase 1 [Source:MGI Symbol;Acc:MGI:2138563]" ... #> $ biotype : chr "protein_coding" "protein_coding" "protein_coding" "protein_coding" ... #> $ broadClass : chr "coding" "coding" "coding" "coding" ... #> $ geneSeqStart : int 4909576 33719887 13139105 12692277 18115191 17727045 17145362 16688051 3999557 4490931 ... #> $ geneSeqEnd : int 5070285 33742564 13374083 12861192 18145902 17766344 17164271 16709611 4409241 4497354 ... #> $ seqName : chr "1" "1" "1" "1" ... #> $ seqStrand : int -1 1 -1 1 -1 1 1 1 -1 -1 ... #> $ seqCoordSystem: chr "chromosome" "chromosome" "chromosome" "chromosome" ...