Stats support for pancreas-liver MPS manuscript

Statistics

Discovery Sciences - DS & QuBi

Exploring the circuit-specific profiles

Original scale

Log-scale

Exploring the Average Evolution (marginal distribution)

Log-scale

Appendix

Reproducibility

Analyses were conducted using the R Statistical language (version 4.2.1; R Core Team, 2022) on macOS Ventura 13.5.2, using the packages magrittr (version 2.0.3; Bache S, Wickham H, 2022), report (version 0.5.5; Makowski D et al., 2021), tibble (version 3.2.1; Müller K, Wickham H, 2023), ggplot2 (version 3.4.0; Wickham H, 2016), stringr (version 1.5.0; Wickham H, 2022), forcats (version 1.0.0; Wickham H, 2023), tidyverse (version 1.3.2; Wickham H et al., 2019), readxl (version 1.4.1; Wickham H, Bryan J, 2022), dplyr (version 1.1.2; Wickham H et al., 2023), purrr (version 1.0.2; Wickham H, Henry L, 2023), readr (version 2.1.3; Wickham H et al., 2022) and tidyr (version 1.3.0; Wickham H et al., 2023).

References

• Bache S, Wickham H (2022). magrittr: A Forward-Pipe Operator for R. Rpackage version 2.0.3, https://CRAN.R-project.org/package=magrittr.
• Makowski D, Ben-Shachar M, Patil I, Lüdecke D (2021). “AutomatedResults Reporting as a Practical Tool to Improve Reproducibility andMethodological Best Practices Adoption.” CRAN.https://github.com/easystats/report.
• Müller K, Wickham H (2023). tibble: Simple Data Frames. R packageversion 3.2.1, https://CRAN.R-project.org/package=tibble.
• R Core Team (2022). R: A Language and Environment for StatisticalComputing. R Foundation for Statistical Computing, Vienna, Austria.https://www.R-project.org/.
• Wickham H (2016). ggplot2: Elegant Graphics for Data Analysis.Springer-Verlag New York. ISBN 978-3-319-24277-4,https://ggplot2.tidyverse.org.
• Wickham H (2022). stringr: Simple, Consistent Wrappers for CommonString Operations. R package version 1.5.0,https://CRAN.R-project.org/package=stringr.
• Wickham H (2023). forcats: Tools for Working with CategoricalVariables (Factors). R package version 1.0.0,https://CRAN.R-project.org/package=forcats.
• Wickham H, Averick M, Bryan J, Chang W, McGowan LD, François R,Grolemund G, Hayes A, Henry L, Hester J, Kuhn M, Pedersen TL, Miller E,Bache SM, Müller K, Ooms J, Robinson D, Seidel DP, Spinu V, TakahashiK, Vaughan D, Wilke C, Woo K, Yutani H (2019). “Welcome to thetidyverse.” Journal of Open Source Software, 4(43), 1686.doi:10.21105/joss.01686 https://doi.org/10.21105/joss.01686.
• Wickham H, Bryan J (2022). readxl: Read Excel Files. R packageversion 1.4.1, https://CRAN.R-project.org/package=readxl.
• Wickham H, François R, Henry L, Müller K, Vaughan D (2023). dplyr: AGrammar of Data Manipulation. R package version 1.1.2,https://CRAN.R-project.org/package=dplyr.
• Wickham H, Henry L (2023). purrr: Functional Programming Tools. Rpackage version 1.0.2, https://CRAN.R-project.org/package=purrr.
• Wickham H, Hester J, Bryan J (2022). readr: Read Rectangular TextData. R package version 2.1.3,https://CRAN.R-project.org/package=readr.
• Wickham H, Vaughan D, Girlich M (2023). tidyr: Tidy Messy Data. Rpackage version 1.3.0, https://CRAN.R-project.org/package=tidyr.