Loading dataset
Points: 84; Features 241; Classes 2
Building the HD model
Selecting features.. This may take a while

Feature                                   Importance
--------------------------------------  ------------
s__Eubacterium_eligens                             0
s__Roseburia_faecis                                1
s__Ruminococcus_torques                            2
s__Bacteroides_coprophilus                         3
s__Proteobacteria_bacterium_CAG_139                4
s__Haemophilus_parainfluenzae                      5
s__Veillonella_infantium                           5
s__Firmicutes_bacterium_CAG_145                    6
s__Prevotella_sp_CAG_1185                          6
s__Escherichia_coli                                7
s__Blautia_wexlerae                                8
s__Phascolarctobacterium_succinatutens             8
s__Bacteroides_finegoldii                          9
s__Bifidobacterium_pseudocatenulatum               9
s__Coprococcus_comes                              10
s__Bifidobacterium_adolescentis                   11
s__Coprococcus_eutactus                           11
s__Streptococcus_oralis                           11
s__Bacteroides_massiliensis                       12
s__Streptococcus_infantis                         13
s__Victivallis_vadensis                           14
s__Mogibacterium_diversum                         15
s__Firmicutes_bacterium_CAG_94                    16
s__Paraprevotella_xylaniphila                     16
s__Asaccharobacter_celatus                        17
s__Veillonella_dispar                             18
s__Clostridium_sp_CAG_253                         19
s__Lactobacillus_paragasseri                      20
s__Alistipes_putredinis                           21
s__Clostridium_clostridioforme                    21
s__Bacteroides_eggerthii                          22
s__Klebsiella_quasipneumoniae                     22
s__Clostridium_citroniae                          23
s__Parabacteroides_goldsteinii                    24
s__Actinomyces_sp_HMSC035G02                      25
s__Dialister_sp_CAG_357                           26
s__Turicibacter_sanguinis                         27
s__Streptococcus_salivarius                       28
s__Enterococcus_faecalis                          29
s__Actinomyces_turicensis                         30
s__Adlercreutzia_equolifaciens                    30
s__Bacteroides_intestinalis                       30
s__Megasphaera_elsdenii                           30
s__Pyramidobacter_piscolens                       30
s__Anaerotruncus_colihominis                      31
s__Sellimonas_intestinalis                        32
s__Klebsiella_pneumoniae                          33
s__Mitsuokella_jalaludinii                        33
s__Enterococcus_faecium                           34
s__Fretibacterium_fastidiosum                     35
s__Clostridium_lavalense                          36
s__Clostridium_bolteae_CAG_59                     37
s__Collinsella_stercoris                          38
s__Ruminococcus_callidus                          38
s__Firmicutes_bacterium_CAG_95                    39
s__Blautia_producta                               40
s__Solobacterium_moorei                           40
s__Clostridium_spiroforme                         41
s__Eikenella_corrodens                            41
s__Bacteroides_clarus                             42
s__Bacteroides_faecis                             42
s__Intestinimonas_butyriciproducens               42
s__Blautia_sp_CAG_257                             43
s__Clostridium_sp_CAG_242                         43
s__Clostridium_symbiosum                          44
s__Eubacterium_rectale                            44
s__Pseudoflavonifractor_sp_An184                  44
s__Prevotella_sp_CAG_520                          45
s__Veillonella_atypica                            46
s__Paraprevotella_clara                           47
s__Clostridium_bolteae                            48
s__Flavonifractor_plautii                         48
s__Sutterella_parvirubra                          48
s__Butyricicoccus_pullicaecorum                   49
s__Turicimonas_muris                              49
s__Phascolarctobacterium_faecium                  50
s__Allisonella_histaminiformans                   51
s__Bacteroides_fragilis                           51
s__Streptococcus_mitis                            51
s__Anaerostipes_hadrus                            52
s__Eubacterium_ventriosum                         52
s__Haemophilus_sp_HMSC71H05                       52
s__Ruthenibacterium_lactatiformans                52
s__Clostridium_sp_CAG_299                         53
s__Hungatella_hathewayi                           54
s__Klebsiella_oxytoca                             54
s__Acidaminococcus_intestini                      55
s__Butyrivibrio_sp_CAG_318                        56
s__Odoribacter_splanchnicus                       57
s__Streptococcus_sanguinis                        57
s__Bilophila_wadsworthia                          58
s__Eisenbergiella_tayi                            58
s__Fusobacterium_nucleatum                        58
s__Gordonibacter_pamelaeae                        58
s__Holdemania_filiformis                          58
s__Oscillibacter_sp_57_20                         58
s__Sanguibacteroides_justesenii                   58
s__Veillonella_parvula                            58
s__Blautia_hydrogenotrophica                      59
s__Slackia_exigua                                 60
s__Ruminococcus_lactaris                          61
s__Clostridium_sp_CAG_58                          62
s__Firmicutes_bacterium_CAG_170                   63
s__Actinomyces_sp_oral_taxon_181                  64
s__Anaerotignum_lactatifermentans                 65
s__Eubacterium_sp_CAG_38                          65
s__Klebsiella_variicola                           65
s__Peptostreptococcus_stomatis                    66
s__Bacteroides_faecis_CAG_32                      67
s__Streptococcus_parasanguinis                    67
s__Eisenbergiella_massiliensis                    68
s__Monoglobus_pectinilyticus                      69
s__Streptococcus_vestibularis                     69
s__Absiella_dolichum                              70
s__Alistipes_indistinctus                         70
s__Clostridium_innocuum                           70
s__Firmicutes_bacterium_CAG_110                   70
s__Gemmiger_formicilis                            70
s__Lactobacillus_rogosae                          70
s__Prevotella_stercorea                           70
s__Raoultella_ornithinolytica                     70
s__Parabacteroides_merdae                         71
s__Alistipes_onderdonkii                          72
s__Bacteroides_nordii                             72
s__Faecalicoccus_pleomorphus                      72
s__Gemella_morbillorum                            72
s__Bacteroides_galacturonicus                     73
s__Bacteroides_cellulosilyticus                   74
s__Roseburia_intestinalis                         75
s__Clostridium_leptum                             76
s__Coprobacillus_cateniformis                     76
s__Bacteroides_salyersiae                         77
s__Blautia_obeum                                  77
s__Fusicatenibacter_saccharivorans                77
s__[Collinsella]_massiliensis                     78
s__Parabacteroides_distasonis                     79
s__Actinomyces_sp_ICM47                           80
s__Bacteroides_vulgatus                           80
s__Dialister_invisus                              80
s__Morganella_morganii                            80
s__Clostridium_asparagiforme                      81
s__Clostridium_saccharolyticum                    81
s__Ruminococcus_bromii                            81
s__Lactobacillus_fermentum                        82
s__Ruminococcaceae_bacterium_D5                   83
s__Citrobacter_youngae                            84
s__Anaeromassilibacillus_sp_An250                 85
s__Lawsonibacter_asaccharolyticus                 85
s__Alistipes_shahii                               86
s__Bacteroides_xylanisolvens                      86
s__Mitsuokella_multacida                          86
s__Blautia_hansenii                               87
s__Catenibacterium_mitsuokai                      87
s__Streptococcus_pasteurianus                     87
s__Lactobacillus_gasseri                          88
s__Ruminococcaceae_bacterium_D16                  88
s__Parvimonas_micra                               89
s__Coprobacter_fastidiosus                        90
s__Streptococcus_australis                        90
s__Megamonas_funiformis                           91
s__Coprococcus_catus                              92
s__Eubacterium_hallii                             92
s__Butyricimonas_synergistica                     93
s__Bacteroides_plebeius                           94
s__Bifidobacterium_dentium                        94
s__Butyricimonas_virosa                           94
s__Bacteroides_ovatus                             95
s__Megamonas_hypermegale                          95
s__Bifidobacterium_longum                         96
s__Dorea_formicigenerans                          96
s__Phascolarctobacterium_sp_CAG_266               97
s__Streptococcus_gordonii                         98
s__Bacteroides_coprocola                          99
s__Collinsella_intestinalis                      100
s__Dialister_pneumosintes                        101
s__Eubacterium_ramulus                           102
s__Eubacterium_sp_CAG_180                        102
s__Klebsiella_michiganensis                      102
s__Porphyromonas_asaccharolytica                 102
s__Desulfovibrio_piger                           103
s__Bacteroides_uniformis                         104
s__Bacteroides_caccae                            105
s__Bacteroides_sp_CAG_144                        105
s__Slackia_isoflavoniconvertens                  105
s__Tyzzerella_nexilis                            105
s__Firmicutes_bacterium_CAG_83                   106
s__Roseburia_sp_CAG_471                          106
s__Ruminococcus_bicirculans                      106
s__Clostridium_disporicum                        107
s__Desulfovibrionaceae_bacterium                 108
s__Akkermansia_muciniphila                       109
s__Eubacterium_dolichum_CAG_375                  110
s__Alistipes_finegoldii                          111
s__Roseburia_hominis                             111
s__Alloscardovia_omnicolens                      112
s__Alistipes_inops                               113
s__Bacteroides_thetaiotaomicron                  114
s__Prevotella_copri                              114
s__Olsenella_scatoligenes                        115
s__Parabacteroides_sp_CAG_409                    115
s__Roseburia_inulinivorans                       115
s__Actinomyces_graevenitzii                      116
s__Barnesiella_intestinihominis                  116
s__Eubacterium_sp_CAG_274                        116
s__Streptococcus_mutans                          116
s__Cloacibacillus_porcorum                       117
s__Prevotella_sp_CAG_279                         118
s__Bifidobacterium_animalis                      119
s__Firmicutes_bacterium_CAG_238                  119
s__Lactobacillus_delbrueckii                     119
s__Ruminococcus_gnavus                           119
s__Streptococcus_anginosus_group                 119
s__Streptococcus_thermophilus                    119
s__Bacteroides_stercoris                         120
s__Clostridium_sp_CAG_167                        120
s__Collinsella_aerofaciens                       120
s__Erysipelatoclostridium_ramosum                120
s__Gemella_sanguinis                             120
s__Holdemanella_biformis                         120
s__Bifidobacterium_bifidum                       121
s__Eubacterium_sp_CAG_251                        121
s__Bifidobacterium_catenulatum                   122
s__Oscillibacter_sp_CAG_241                      122
s__Intestinibacter_bartlettii                    123
s__Bacteroides_dorei                             124
s__Coprobacter_secundus                          124
s__Eubacterium_siraeum                           124
s__Faecalibacterium_prausnitzii                  124
s__Rothia_mucilaginosa                           125
s__Parabacteroides_johnsonii                     126
s__Clostridium_paraputrificum                    127
s__Enorma_massiliensis                           127
s__Eggerthella_lenta                             128
s__Alloprevotella_tannerae                       129
s__Bifidobacterium_breve                         130
s__Actinomyces_odontolyticus                     131
s__Agathobaculum_butyriciproducens               131
s__Dorea_longicatena                             131
s__Enterobacter_cloacae_complex                  131
s__Lachnospira_pectinoschiza                     131
s__Parasutterella_excrementihominis              132

  Importance    Score (accuracy)
------------  ------------------
           0              0
           1              0.6772
           2              0.714
           3              0.7132
           4              0.7132
           5              0.7132
           6              0.7132
           7              0.7015
           8              0.725
           9              0.761
          10              0.7493
          11              0.7498
          12              0.7625
          13              0.75
          14              0.7728
          15              0.7507
          16              0.75
          17              0.75
          18              0.7735
          19              0.786
          20              0.7853
          21              0.7857
          22              0.7868
          23              0.8103
          24              0.8103
          25              0.8103
          26              0.7993
          27              0.7993
          28              0.7875
          29              0.7978
          30              0.7735
          31              0.7985
          32              0.7978
          33              0.7857
          34              0.7978
          35              0.8088
          36              0.8213
          37              0.8103
          38              0.7857
          39              0.7971
          40              0.8096
          41              0.8206
          42              0.8091
          43              0.8092
          44              0.7975
          45              0.8456
          46              0.8574
          47              0.8331
          48              0.81
          49              0.8221
          50              0.8103
          51              0.8213
          52              0.8097
          53              0.8331
          54              0.8224
          55              0.8338
          56              0.8456
          57              0.8338
          58              0.8093
          59              0.8456
          60              0.8206
          61              0.8221
          62              0.8088
          63              0.8221
          64              0.8096
          65              0.8211
          66              0.8331
          67              0.821
          68              0.8331
          69              0.8206
          70              0.8094
          71              0.8213
          72              0.7976
          73              0.8103
          74              0.8449
          75              0.7971
          76              0.8103
          77              0.798
          78              0.811
          79              0.8096
          80              0.7744
          81              0.785
          82              0.7846
          83              0.7853
          84              0.7846
          85              0.7857
          86              0.7728
          87              0.785
          88              0.7849
          89              0.7971
          90              0.7728
          91              0.7838
          92              0.7846
          93              0.7971
          94              0.7735
          95              0.7971
          96              0.7853
          97              0.7971
          98              0.7978
          99              0.7971
         100              0.7853
         101              0.7971
         102              0.7735
         103              0.7846
         104              0.7978
         105              0.7853
         106              0.7853
         107              0.7963
         108              0.7978
         109              0.786
         110              0.7743
         111              0.7735
         112              0.7743
         113              0.7728
         114              0.7368
         115              0.725
         116              0.725
         117              0.725
         118              0.725
         119              0.7126
         120              0.713
         121              0.7129
         122              0.7125
         123              0.7125
         124              0.7132
         125              0.7368
         126              0.7368
         127              0.7254
         128              0.7485
         129              0.725
         130              0.761
         131              0.7137
         132              0.7257

Best importance: 46
Selected features: 69

Features
--------------------------------------
s__Actinomyces_sp_HMSC035G02
s__Actinomyces_turicensis
s__Adlercreutzia_equolifaciens
s__Alistipes_putredinis
s__Anaerotruncus_colihominis
s__Asaccharobacter_celatus
s__Bacteroides_clarus
s__Bacteroides_coprophilus
s__Bacteroides_eggerthii
s__Bacteroides_faecis
s__Bacteroides_finegoldii
s__Bacteroides_intestinalis
s__Bacteroides_massiliensis
s__Bifidobacterium_adolescentis
s__Bifidobacterium_pseudocatenulatum
s__Blautia_producta
s__Blautia_sp_CAG_257
s__Blautia_wexlerae
s__Clostridium_bolteae_CAG_59
s__Clostridium_citroniae
s__Clostridium_clostridioforme
s__Clostridium_lavalense
s__Clostridium_sp_CAG_242
s__Clostridium_sp_CAG_253
s__Clostridium_spiroforme
s__Clostridium_symbiosum
s__Collinsella_stercoris
s__Coprococcus_comes
s__Coprococcus_eutactus
s__Dialister_sp_CAG_357
s__Eikenella_corrodens
s__Enterococcus_faecalis
s__Enterococcus_faecium
s__Escherichia_coli
s__Eubacterium_eligens
s__Eubacterium_rectale
s__Firmicutes_bacterium_CAG_145
s__Firmicutes_bacterium_CAG_94
s__Firmicutes_bacterium_CAG_95
s__Fretibacterium_fastidiosum
s__Haemophilus_parainfluenzae
s__Intestinimonas_butyriciproducens
s__Klebsiella_pneumoniae
s__Klebsiella_quasipneumoniae
s__Lactobacillus_paragasseri
s__Megasphaera_elsdenii
s__Mitsuokella_jalaludinii
s__Mogibacterium_diversum
s__Parabacteroides_goldsteinii
s__Paraprevotella_xylaniphila
s__Phascolarctobacterium_succinatutens
s__Prevotella_sp_CAG_1185
s__Prevotella_sp_CAG_520
s__Proteobacteria_bacterium_CAG_139
s__Pseudoflavonifractor_sp_An184
s__Pyramidobacter_piscolens
s__Roseburia_faecis
s__Ruminococcus_callidus
s__Ruminococcus_torques
s__Sellimonas_intestinalis
s__Solobacterium_moorei
s__Streptococcus_infantis
s__Streptococcus_oralis
s__Streptococcus_salivarius
s__Turicibacter_sanguinis
s__Veillonella_atypica
s__Veillonella_dispar
s__Veillonella_infantium
s__Victivallis_vadensis

Total ML models: 14977

Building a model with the selected features only
Cross-validating model with 5 folds

Class labels: ['CRC', 'control']

Fold 1 (20 retrainings)
	Error rate: 0.0
	Accuracy: 0.7647
	F1: 0.7597
	Precision: 0.7772
	Recall: 0.7647
	Matthews Corr. Coeff.: 0.5367
	Confusion Matrix:
		TN: 5
		FP: 3
		FN: 1
		TP: 8

Fold 2 (20 retrainings)
	Error rate: 0.0
	Accuracy: 0.7647
	F1: 0.7631
	Precision: 0.7832
	Recall: 0.7647
	Matthews Corr. Coeff.: 0.5494
	Confusion Matrix:
		TN: 7
		FP: 1
		FN: 3
		TP: 6

Fold 3 (1 retrainings)
	Error rate: 0.07462686567164178
	Accuracy: 0.6471
	F1: 0.6471
	Precision: 0.6471
	Recall: 0.6471
	Matthews Corr. Coeff.: 0.2917
	Confusion Matrix:
		TN: 6
		FP: 3
		FN: 3
		TP: 5

Fold 4 (20 retrainings)
	Error rate: 0.0
	Accuracy: 0.7647
	F1: 0.7631
	Precision: 0.7832
	Recall: 0.7647
	Matthews Corr. Coeff.: 0.5494
	Confusion Matrix:
		TN: 6
		FP: 3
		FN: 1
		TP: 7

Fold 5 (2 retrainings)
	Error rate: 0.029411764705882353
	Accuracy: 0.6875
	F1: 0.6537
	Precision: 0.8077
	Recall: 0.6875
	Matthews Corr. Coeff.: 0.4804
	Confusion Matrix:
		TN: 3
		FP: 5
		FN: 0
		TP: 8

Retrainings: 12.6000 (10.1390 stdev)
Error Rate: 0.0208 (0.0327 stdev)
Accuracy: 0.7257 (0.0552 stdev)
F1: 0.7173 (0.0612 stdev)
Precision: 0.7597 (0.0640 stdev)
Recall: 0.7257 (0.0552 stdev)
Matthews Corr. Coeff.: 0.4815 (0.1099 stdev)
Total elapsed time: 1122s
