Cookbook for setting up ODAS Experiments
##############################################

To UPDATE to Latest Tag from Yuri

1. Update to Yuri's Latest
   cd /gpfsm/dnb42/projects/p17/rkovach/geos5/sandbox/yuri-S2S-2_1_UNSTABLE/GEOSodas/src
   cvs -nq upd 
   cvs upd -r yuri-S2S-2_1_UNSTABLE 

2. Build
   cd GEOSodas/src/
   source g5_modules
   gmake -j install 

3. Build ODAS
   cd Applications
   gmake install

4. Setup
   cd Applications/GEOSgcm_App/
   gcm_setup

5. cd to your experiment directory
   cp /gpfsm/dnb42/projects/p17/rkovach/geos5/sandbox/yuri-S2S-2_1_UNSTABLE/GEOSodas/src/Applications/UMD_Etc/UMD_rc/setup_post.csh .
   run setup_post.csh
   
6. Get restarts
   cp -r /gpfsm/dnb42/projects/p17/bzhao/geos5/exp/restart/rk035/


#################################################################
DEFAULT PARAMETERS
#################################################################
gcm_run.j
#########
007: #SBATCH --time=12:00:00
008: #SBATCH --ntasks=1200
009: #SBATCH --ntasks-per-node=24
010: #SBATCH --job-name=EXPID
011: #SBATCH --qos=ocndev
012: #SBATCH -A g0609
013: #SBATCH -o EXPID.o%j
014: #SBATCH -e EXPID.e%j

196: /bin/ln -s /discover/nobackup/yvikhlia/coupled/Forcings/a360x181_o720x410/D
C0360xPC0181_TM0720xTM0410-Pfafstetter.til tile_hist_360x180.data
197: /bin/ln -s /discover/nobackup/yvikhlia/coupled/Forcings/a720x361_o720x410/D
C0720xPC0361_TM0720xTM0410-Pfafstetter.til tile_hist_720x361.data
/bin/ln -s /discover/nobackup/projects/gmao/share/gmao_ops/fvInput/merra_land/pr
ecip_CPCUexcludeAfrica-CMAP_corrected_MERRA/GEOSdas-2_1_4 ExtData/PCP

408: $GEOSBIN/binarytile.x tile_hist_360x180.data tile_hist_360x180.bin
409: $GEOSBIN/binarytile.x tile_hist_720x361.data tile_hist_720x361.bin

438: #$RUN_CMD $NPES ./GEOSgcm.x
439: $EXPDIR/ocean_das/UMD_Etc/scripts/oda_run.j $NX $NY

527: set dsets="ocean_month ocean_daily"


AGCM.rc
#######
        NY: 120
	OGCM_NX: 120
	CICE_NPROCS: 1200

	REPLAY_FILE: /discover/nobackup/projects/gmao/share/gmao_ops/verification/MERRA2_MEANS/ana/Y%y4/M%m2/
	MERRA-2.ana.eta.%y4%m2%d2_%h2z.nc4
	#REPLAY_FILE: /gpfsm/dnb42/projects/p17/gvernier/SAND_BOXES/MERRA2/Y%y4/M%m2/MERRA-2.ana.eta.%y4%m2%d2_%h2z.nc
	REPLAY_MODE: Intermittent

        PRECIP_FILE: ExtData/PCP/d5_merra/Y%y4/M%m2/d5_merra.tavg1_2d_lfo_Nx_cor
r.%y4%m2%d2_%h230z.nc

        LTS_LOW:18.5

diag_table
##########
	Many changes

input.nml
#########
  	# Turn off ocean convection
 	&ocean_convect_nml
       	use_this_module=.false.
       	convect_full_scalar=.true.      
       	convect_full_vector=.false.

  	# Turn on Nudging to SST
 	&ocean_sponges_tracer_nml
       	use_this_module=.true.
       	damp_coeff_3d=.true.

  	# Put lid on ocean for SSH
 	&ocean_sbc_nml
      	zero_net_water_restore=.true.
      	zero_net_water_coupler=.true.

 	&ocean_increment_tracer_nml
       	use_this_module=.true.
       	days_to_increment = 0
       	secs_to_increment = 64800

   	&ocean_model_nml
        layout = 120,10,

        &ocean_sbc_nml
        rotate_winds=.false.

CAP.rc
######
JOB_SGMT:     00000005 000000
NUM_SGMT:     5
HEARTBEAT_DT: 450

