Package: goat
Type: Package
Title: Gene Set Analysis Using the Gene Set Ordinal Association Test
Version: 1.0
Authors@R:
    person(given = "Frank",
           family = "Koopmans",
           role = c("aut", "cre"),
           email = "ftwkoopmans@gmail.com",
           comment = c(ORCID = "0000-0002-4973-5732"))
Description:
    Perform gene set enrichment analyses using the Gene set Ordinal
    Association Test (GOAT) algorithm and visualize your
    results. Koopmans, F. (2024) <doi:10.1101/2023.12.10.570979>.
URL: https://github.com/ftwkoopmans/goat/
License: Apache License (>= 2)
Depends:
    R (>= 4.1.0),
    dplyr (>= 1.0.3)
Imports:
    tibble (>= 3.0.0),
    tidyselect (>= 1.2.0),
    tidyr (>= 1.1.2),
    data.table (>= 1.14.0),
    Matrix (>= 1.4-0),
    readxl (>= 1.4.1),
    writexl (>= 1.4.1),
    Rcpp (>= 1.0.9),
    vctrs (>= 0.3.8),
    MonoPoly (>= 0.3-10),
    ggplot2 (>= 3.3.0),
    pheatmap (>= 1.0.8),
    treemap (>= 2.4),
    igraph (>= 1.2.5),
    ggraph (>= 2.0.0)
Suggests:
    AnnotationDbi,
    GO.db,
    org.Hs.eg.db,
    fgsea,
    testthat (>= 3.0.0)
LinkingTo: Rcpp
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Config/testthat/edition: 3
Language: en-US
Remotes:
    github::ctlab/fgsea
BiocViews:
