Spp	ID	Popular_group_name	Common_name	Scientific_name	short_name	NonRedundantProteomeSize	Completeness	SingleCopy_BUSCOs	Duplicated_BUSCOs	Fragmented_BUSCOs	Missing_BUSCOs	TotalBUSCOs	min_cell_types	max_cell_types	Average_cell_types	Reference	Excluded_due	Obs
Tetraodon_nigroviridis	GCA_000180735.1	Metazoa(Vertebrata)	Green_spotted_pufferfish	Tetraodon_nigroviridis	T_nig	27918	85.9	84.7	1.2	11.8	2.3	255	119.5	119.5	119.5	"Chen_et_al.,_2014"	-	-
Daphnia_pulex	GCA_000187875.1	Metazoa(Invertebrata)	Water_flea	Daphnia_pulex	D_pul	30590	97.6	94.9	2.7	0.4	2	255	50	50	50	"Chen_et_al.,_2014"	-	-
Achlya_hypogyna	GCA_002081595.1	Protist	Oomycete_water_mold	Achlya_hypogyna	A_hyp	14406	94.2	92.2	2	1.6	4.2	255	6	6	6	"Number_of_cell_types_from_oomycete_Phytophthora_ramorum_from_Chen,_2013"	-	-
Phytophthora_ramorum	GCA_020800215.1	Protist	Oomycete plant pathogen	Phytophthora_ramorum	P_ram	15267	94.9	90.6	4.3	2	3.1	255	7.2	8.5	7.85	"Chen et al., 2014"	No ORFs in gbff	-
Drosophila_melanogaster	GCF_000001215.4	Metazoa(Invertebrata)	Fruit_fly	Drosophila_melanogaster	D_mel	13968	100	99.6	0.4	0	0	255	50	64	57	"Chen_et_al.,_2014"	-	-
Homo_sapiens	GCF_000001405.39	Metazoa(Vertebrata)	Human	Homo_sapiens	H_sap	19514	99.6	97.6	2	0.4	0	255	118	411	264.5	"Chen_et_al.,_2014"	-	-
Mus_musculus	GCF_000001635.27	Metazoa(Vertebrata)	Mouse	Mus_musculus	M_mus	22173	99.6	97.6	2	0	0.4	255	102	159	130.5	"Chen_et_al.,_2014"	-	-
Arabidopsis_thaliana	GCF_000001735.4	Plantae(Angiosperm)	Thale_cress	Arabidopsis_thaliana	A_tha	27509	100	82	18	0	0	255	50	68	59	"Chen_et_al.,_2014"	-	-
Danio_rerio	GCF_000002035.6	Metazoa(Vertebrata)	Zebrafish	Danio_rerio	D_rer	26423	100	97.6	2.4	0	0	255	104	135	119.5	"Chen_et_al.,_2014"	-	-
Trypanosoma_brucei_brucei_TREU927	GCF_000002445.2	Protist	Sleeping sickness	Trypanosoma_brucei	T_bru	8758	57.3	55.3	2	6.7	36	255	7.2	8.5	7.85	"Chen et al., 2014"	> 10% missing BUSCOs	-
Kluyveromyces_lactis	GCF_000002515.2	Fungi	Yeast	Kluyveromyces_lactis	K_lac	5084	89.4	89	0.4	2.7	7.9	255	3	3.1	3.05	"Chen_et_al.,_2014"	-	-
Yarrowia_lipolytica_CLIB122	GCF_000002525.2	Fungi	NA	Yarrowia_lipolytica	Y_lip	6471	94.9	94.9	0	3.1	2	255	3	3.1	3.05	"Chen et al., 2014"	Not present in TToL	-
Chlamydomonas_reinhardtii	GCF_000002595.1	Plantae(Chlorophyta)	Green_alga	Chlamydomonas_reinhardtii	C_rei	14415	76.1	76.1	0	12.9	11	255	1	1	1	"Chen_et_al.,_2014"	-	-
Leishmania_major_strain_Friedlin	GCF_000002725.2	Protist	Leishmaniasis parasite	Leishmania_major	L_maj	8314	53.4	51	2.4	10.2	36.4	255	7.2	8.5	7.85	"Chen et al., 2014"	> 10% missing BUSCOs	-
Plasmodium_falciparum_3D7	GCF_000002765.5	Protist	Malaria parasite	Plasmodium_falciparum	P_fal	5312	56.5	56.1	0.4	3.5	40	255	7.2	8.5	7.85	"Chen et al., 2014"	> 10% missing BUSCOs	-
Schizosaccharomyces_pombe	GCF_000002945.1	Fungi	Fission_yeast	Schizosaccharomyces_pombe	S_pom	5130	96.9	95.3	1.6	0.4	2.7	255	3	5.7	4.35	"Chen_et_al.,_2014"	-	-
Caenorhabditis_elegans	GCF_000002985.6	Metazoa(Invertebrata)	Nematode	Caenorhabditis_elegans	C_ele	19984	97.7	96.9	0.8	0.8	1.5	255	22	35	28.5	"Chen_et_al.,_2014"	-	-
Sorghum_bicolor	GCF_000003195.3	Plantae(Angiosperm)	Sorghum	Sorghum_bicolor	S_bic	28236	100	88.2	11.8	0	0	255	27.25	27.25	27.25	"Chen_et_al.,_2014"	-	-
Theileria_annulata	GCF_000003225.4	Protist	Theileriosis	Theileria_annulata	T_ann	3795	47.5	46.7	0.8	9.4	43.1	255	7.2	8.5	7.85	"Chen et al., 2014"	> 10% missing BUSCOs	-
Vitis_vinifera	GCF_000003745.3	Plantae(Angiosperm)	Common_grape_vine	Vitis_vinifera	V_vin	25828	99.2	90.2	9	0	0.8	255	27.25	27.25	27.25	"Chen_et_al.,_2014"	-	-
Branchiostoma_floridae	GCF_000003815.2	Metazoa(Invertebrata)	Anfioxo	Branchiostoma_floridae	B_flo	26689	98.1	96.1	2	2	0.1	255	100	100	100	"Chen_et_al.,_2014"	-	-
Hydra_vulgaris	GCF_000004095.1	Metazoa(Invertebrata)	Hydra	Hydra_vulgaris	H_vul	20055	96.5	95.7	0.8	3.1	0.4	255	22	22	22	"Chen_et_al.,_2014"	-	Genomic_data_from_species_H._vulgaris
Xenopus_tropicalis	GCF_000004195.4	Metazoa(Vertebrata)	Western_clawed_frog	Xenopus_tropicalis	X_tro	21826	100	99.6	0.4	0	0	255	114	145	129.5	"Chen_et_al.,_2014"	-	-
Caenorhabditis_briggsae	GCF_000004555.1	Metazoa(Invertebrata)	Nematode	Caenorhabditis_briggsae	C_bri	19402	92.5	89.4	3.1	3.1	4.4	255	22	35	28.5	"Chen_et_al.,_2014"	-	-
Dictyostelium_discoideum_AX4	GCF_000004695.1	Protist	Slime_mould	Dictyostelium_discoideum	D_dis	13289	93.7	89.8	3.9	1.6	4.7	255	3	6.3	4.65	"Chen_et_al.,_2014"	-	-
Brachypodium_distachyon	GCF_000005505.3	Plantae(Angiosperm)	Purple_false_brome	Brachypodium_distachyon	B_dis	25535	99.6	86.7	12.9	0	0.4	255	27.25	27.25	27.25	"Chen_et_al.,_2014"	-	-
Anopheles_gambiae_str._PEST	GCF_000005575.2	Metazoa(Invertebrata)	Malaria_mosquito	Anopheles_gambiae	A_gam	12603	98.5	96.5	2	1.2	0.3	255	64	64	64	"Chen_et_al.,_2014"	-	-
Toxoplasma_gondii_ME49	GCF_000006565.2	Protist	Toxoplasmosis parasite	Toxoplasma_gondii	T_gon	8318	61.2	61.2	0	8.6	30.2	255	5	5	5	"Number of cell types from Black and Boothroyd, 2000"	> 10% missing BUSCOs	-
Anolis_carolinensis	GCF_000090745.1	Metazoa(Vertebrata)	Green_anole	Anolis_carolinensis	A_car	19364	94.9	92.5	2.4	1.6	3.5	255	140	140	140	"Chen_et_al.,_2014"	-	-
Amphimedon_queenslandica	GCF_000090795.1	Metazoa(Invertebrata)	Sponge	Amphimedon_queenslandica	A_que	20788	94.5	89.4	5.1	3.5	2	255	12	16	14	"Chen_et_al.,_2014"	-	-
Encephalitozoon_cuniculi_GB-M1	GCF_000091225.1	Fungi	NA	Encephalitozoon_cuniculi	E_cun	1996	27.9	27.5	0.4	7.5	64.6	255	3	3.7	3.35	"Chen et al., 2014"	> 10% missing BUSCOs	-
Ostreococcus_lucimarinus_CCE9901	GCF_000092065.1	Plantae(Chlorophyta)	Green algae	Ostreococcus_lucimarinus	O_luc	7603	78.1	75.7	2.4	6.7	15.2	255	1	1	1	"Chen et al., 2014"	> 10% missing BUSCOs	-
Phytophthora_infestans_T30-4	GCF_000142945.1	Protist	Oomycete_plant_pathogen	Phytophthora_infestans	P_inf	17797	90.2	85.5	4.7	4.7	5.1	255	7.85	7.85	7.85	"Number_of_cell_types_from_oomycete_Phytophthora_ramorum_from_Chen,_2013"	-	-
Selaginella_moellendorffii	GCF_000143415.4	Plantae(Lycophyte)	Spikemoss	Selaginella_moellendorffii	S_moe	33936	99.2	6.3	92.9	0.4	0.4	255	25	25	25	"Chen et al., 2014"	> 25% duplicated BUSCOs	-
Volvox_carteri_f._nagariensis	GCF_000143455.1	Plantae(Chlorophyta)	Green_algae	Volvox_carteri	V_car	14434	80	79.6	0.4	8.2	11.8	255	2	2	2	"Chen_et_al.,_2014"	-	-
Saccharomyces_cerevisiae_S288C	GCF_000146045.2	Fungi	Bakers_yeast	Saccharomyces_cerevisiae	S_cer	6016	93.3	92.5	0.8	1.2	5.5	255	3	5.1	4.05	"Chen_et_al.,_2014"	-	-
Aspergillus_nidulans_FGSC_A4	GCF_000149205.2	Fungi	Filamentous_fungi	Aspergillus_nidulans	A_nid	9556	89	88.2	0.8	6.3	4.7	255	5	6.1	5.55	"Chen_et_al.,_2014"	-	-
Phytophthora_sojae	GCF_000149755.1	Protist	Oomycete_plant_pathogen	Phytophthora_sojae	P_soj	26489	86.6	83.9	2.7	3.9	9.5	255	7.85	7.85	7.85	"Number_of_cell_types_from_oomycete_Phytophthora_ramorum_from_Chen,_2013"	-	-
Trichoplax_adhaerens	GCF_000150275.1	Metazoa(Invertebrata)	Trichoplax	Trichoplax_adhaerens	T_adh	11518	92.9	92.5	0.4	4.7	2.4	255	4	4	4	"Chen_et_al.,_2014"	-	-
Capsaspora_owczarzaki_ATCC_30864	GCF_000151315.2	Protist	Capsaspora	Capsaspora_owczarzaki	C_owc	8621	92.6	92.2	0.4	3.1	4.3	255	3	3	3	Number_of_cell_types_from_Sebe-Pedros_et_al._2013.	-	-
Saprolegnia_parasitica_CBS_223.65	GCF_000151545.1	Protist	Oomycete_water_mould	Saprolegnia_parasitica	S_par	20121	87.8	82.7	5.1	3.5	8.7	255	6	6	6	"Number_of_cell_types_from_West_et_al.,_2006"	-	-
Felis_catus	GCF_000181335.3	Metazoa(Vertebrata)	Cat	Felis_catus	F_cat	19732	98.8	98	0.8	1.2	0	255	159	159	159	"Chen_et_al.,_2014"	-	-
Neurospora_crassa_OR74A	GCF_000182925.2	Fungi	Red_bread_mold	Neurospora_crassa	N_cra	9757	100	100	0	0	0	255	5	6.1	5.55	"Chen_et_al.,_2014"	-	-
Entamoeba_histolytica_HM-1:IMSS	GCF_000208925.1	Protist	Amoeba	Entamoeba_histolytica	E_his	8163	52.6	46.3	6.3	5.1	42.3	255	3	6.3	4.65	"Chen et al., 2014"	> 10% missing BUSCOs	-
Nematostella_vectensis	GCF_000209225.1	Metazoa(Invertebrata)	Starlet_sea_anemone	Nematostella_vectensis	N_vec	23845	99.6	96.9	2.7	0.4	0	255	20	22	21	"Chen_et_al.,_2014"	-	-
Ostreococcus_tauri	GCF_000214015.3	Plantae(Chlorophyta)	marine_green_alga	Ostreococcus_tauri	O_tau	7765	80.4	80	0.4	5.9	13.7	255	1	1	1	"Chen_et_al.,_2014"	-	-
Ciona_intestinalis	GCF_000224145.3	Metazoa(Invertebrata)	Vase_tunicate	Ciona_intestinalis	C_int	13715	96.5	96.5	0	2	1.5	255	68	80	74	"Chen_et_al.,_2014"	-	-
Phytophthora_parasitica_INRA-310	GCF_000247585.1	Protist	Oomycete_plant_pathogen	Phytophthora_parasitica	P_par	23121	94.5	92.9	1.6	2	3.5	255	7.85	7.85	7.85	"Number_of_cell_types_from_oomycete_Phytophthora_ramorum_from_Chen,_2013"	-	-
Ustilago_maydis_521	GCF_000328475.2	Fungi	Corn_smut	Ustilago_maydis	U_may	6762	98.8	98.8	0	0.4	0.8	255	3	5.7	4.35	"Chen_et_al.,_2014"	-	-
Tupaia_chinensis	GCF_000334495.1	Metazoa(Vertebrata)	Northern treeshrew	Tupaia_belangeri	T_bel	21077	98.8	95.3	3.5	0.8	0.4	255	159	159	159	"Chen et al., 2014"	No ORFs in gbff	-
Oryza_sativa_Japonica_Group	GCF_001433935.1	Plantae(Angiosperm)	Rice	Oryza_sativa	O_sat	28738	99.6	87.8	11.8	0.4	0	255	26	44	35	"Chen_et_al.,_2014"	-	-
Bos_taurus	GCF_002263795.1	Metazoa(Vertebrata)	Cow	Bos_taurus	B_tau	21053	99.6	96.5	3.1	0.4	0	255	118	159	138.5	"Chen_et_al.,_2014"	-	-
Pan_troglodytes	GCF_002880755.1	Metazoa(Vertebrata)	Chimpanzee	Pan_troglodytes	P_tro	21521	99.6	98.4	1.2	0.4	0	255	118	220	169	"Chen_et_al.,_2014"	-	-
Apis_mellifera	GCF_003254395.2	Metazoa(Invertebrata)	Honey_bee	Apis_mellifera	A_mel	9934	99.2	99.2	0	0.4	0.4	255	50	68	59	"Chen_et_al.,_2014"	-	-
Canis_lupus_familiaris	GCF_014441545.1	Metazoa(Vertebrata)	Dog	Canis_lupus_familiaris	C_lup	20949	98.5	92.2	6.3	1.2	0.3	255	99	159	129	"Chen_et_al.,_2014"	-	-
Rattus_norvegicus	GCF_015227675.2	Metazoa(Vertebrata)	Brown_rat	Rattus_norvegicus	R_nor	22221	98.8	96.1	2.7	0.8	0.4	255	118	159	138.5	"Chen_et_al.,_2014"	-	-
Gallus_gallus	GCF_016699485.2	Metazoa(Vertebrata)	Chicken	Gallus_gallus	G_gal	17797	98.8	97.6	1.2	0.8	0.4	255	118	190	154	"Chen_et_al.,_2014"	-	-
Takifugu_rubripes	GCF_901000725.2	Metazoa(Vertebrata)	Japanese_pufferfish	Takifugu_rubripes	T_rub	22062	98.9	92.2	6.7	0	1.1	255	104	135	119.5	"Chen_et_al.,_2014"	-	-
Zea_mays	GCF_902167145.1	Plantae(Angiosperm)	Maize	Zea_mays	Z_may	34337	99.2	65.5	33.7	0.4	0.4	255	27.25	100	63.625	"Chen et al., 2014"	> 25% duplicated BUSCOs	-
Phanerochaete_chrysosporium	GCA_001910725.1	Fungi	NA	Phanerochaete_chrysosporium	P_chr	NA	NA	NA	NA	NA	NA	NA	3	5.7	4.35	"Chen et al., 2014"	No ORFs in gbff	-
Physcomitrella_patens	GCF_000002425.4	Plantae(Bryophyte)	Spanish moss	Physcomitrella_patens	P_pat	NA	NA	73.3	26.7	0	0	255	20	22	21	"Chen et al., 2014"	> 25% duplicated BUSCOs	-
Populus_balsamifera	GCF_000002775.4	Plantae(Angiosperm)	Eastern balsam poplar	Populus_balsamifera	P_bal	31641	99.6	56.1	43.5	0	0.4	255	28.5	28.5	28.5	"Chen et al., 2014"	> 25% duplicated BUSCOs	Populus trichocarpa
