## phyloseq
## "McMurdie PJ, Holmes S (2013). \"phyloseq: An R package for reproducibleinteractive analysis and graphics of microbiome census data.\" _PLoSONE_, *8*(4), e61217.<http://dx.plos.org/10.1371/journal.pone.0061217>."
## vegan
## "Oksanen J, Simpson G, Blanchet F, Kindt R, Legendre P, Minchin P,O'Hara R, Solymos P, Stevens M, Szoecs E, Wagner H, Barbour M, BedwardM, Bolker B, Borcard D, Carvalho G, Chirico M, De Caceres M, Durand S,Evangelista H, FitzJohn R, Friendly M, Furneaux B, Hannigan G, Hill M,Lahti L, McGlinn D, Ouellette M, Ribeiro Cunha E, Smith T, Stier A, TerBraak C, Weedon J (2022). _vegan: Community Ecology Package_. R packageversion 2.6-4, <https://CRAN.R-project.org/package=vegan>."
## lattice
## "Sarkar D (2008). _Lattice: Multivariate Data Visualization with R_.Springer, New York. ISBN 978-0-387-75968-5,<http://lmdvr.r-forge.r-project.org>."
## permute
## "Simpson G (2022). _permute: Functions for Generating RestrictedPermutations of Data_. R package version 0.9-7,<https://CRAN.R-project.org/package=permute>."
## forcats
## "Wickham H (2023). _forcats: Tools for Working with CategoricalVariables (Factors)_. R package version 1.0.0,<https://CRAN.R-project.org/package=forcats>."
## stringr
## "Wickham H (2022). _stringr: Simple, Consistent Wrappers for CommonString Operations_. R package version 1.5.0,<https://CRAN.R-project.org/package=stringr>."
## dplyr
## "Wickham H, François R, Henry L, Müller K, Vaughan D (2023). _dplyr: AGrammar of Data Manipulation_. R package version 1.1.0,<https://CRAN.R-project.org/package=dplyr>."
## purrr
## "Wickham H, Henry L (2023). _purrr: Functional Programming Tools_. Rpackage version 1.0.1, <https://CRAN.R-project.org/package=purrr>."
## readr
## "Wickham H, Hester J, Bryan J (2022). _readr: Read Rectangular TextData_. R package version 2.1.3,<https://CRAN.R-project.org/package=readr>."
## tidyr
## "Wickham H, Vaughan D, Girlich M (2023). _tidyr: Tidy Messy Data_. Rpackage version 1.3.0, <https://CRAN.R-project.org/package=tidyr>."
## tibble
## "Müller K, Wickham H (2022). _tibble: Simple Data Frames_. R packageversion 3.1.8, <https://CRAN.R-project.org/package=tibble>."
## ggplot2
## "Wickham H (2016). _ggplot2: Elegant Graphics for Data Analysis_.Springer-Verlag New York. ISBN 978-3-319-24277-4,<https://ggplot2.tidyverse.org>."
## tidyverse
## "Wickham H, Averick M, Bryan J, Chang W, McGowan LD, François R,Grolemund G, Hayes A, Henry L, Hester J, Kuhn M, Pedersen TL, Miller E,Bache SM, Müller K, Ooms J, Robinson D, Seidel DP, Spinu V, TakahashiK, Vaughan D, Wilke C, Woo K, Yutani H (2019). \"Welcome to thetidyverse.\" _Journal of Open Source Software_, *4*(43), 1686.doi:10.21105/joss.01686 <https://doi.org/10.21105/joss.01686>."geodist “Padgham M (2021). geodist: Fast, Dependency-Free Geodesic DistanceCalculations. R package version 0.0.7,https://github.com/hypertidy/geodist.” vegan “Oksanen J, Simpson G, Blanchet F, Kindt R, Legendre P, Minchin P, O’HaraR, Solymos P, Stevens M, Szoecs E, Wagner H, Barbour M, Bedward M,Bolker B, Borcard D, Carvalho G, Chirico M, De Caceres M, Durand S,Evangelista H, FitzJohn R, Friendly M, Furneaux B, Hannigan G, Hill M,Lahti L, McGlinn D, Ouellette M, Ribeiro Cunha E, Smith T, Stier A, TerBraak C, Weedon J (2022). vegan: Community Ecology Package. R packageversion 2.6-4, https://CRAN.R-project.org/package=vegan.” lattice “Sarkar D (2008). Lattice: Multivariate Data Visualization with R.Springer, New York. ISBN 978-0-387-75968-5,http://lmdvr.r-forge.r-project.org.” permute “Simpson G (2022). permute: Functions for Generating RestrictedPermutations of Data. R package version 0.9-7,https://CRAN.R-project.org/package=permute.” phyloseq “McMurdie PJ, Holmes S (2013). “phyloseq: An R package for reproducibleinteractive analysis and graphics of microbiome census data.” PLoSONE, 8(4), e61217. http://dx.plos.org/10.1371/journal.pone.0061217.” ecodist “Goslee SC, Urban DL (2007). “The ecodist package for dissimilarity-basedanalysis of ecological data.” Journal of Statistical Software, 22,1-19. doi:10.18637/jss.v022.i07 https://doi.org/10.18637/jss.v022.i07.” forcats “Wickham H (2023). forcats: Tools for Working with Categorical Variables(Factors). R package version 1.0.0,https://CRAN.R-project.org/package=forcats.” stringr “Wickham H (2022). stringr: Simple, Consistent Wrappers for CommonString Operations. R package version 1.5.0,https://CRAN.R-project.org/package=stringr.” dplyr “Wickham H, François R, Henry L, Müller K, Vaughan D (2023). dplyr: AGrammar of Data Manipulation. R package version 1.1.0,https://CRAN.R-project.org/package=dplyr.” purrr “Wickham H, Henry L (2023). purrr: Functional Programming Tools. Rpackage version 1.0.1, https://CRAN.R-project.org/package=purrr.” readr “Wickham H, Hester J, Bryan J (2022). readr: Read Rectangular TextData. R package version 2.1.3,https://CRAN.R-project.org/package=readr.” tidyr “Wickham H, Vaughan D, Girlich M (2023). tidyr: Tidy Messy Data. Rpackage version 1.3.0, https://CRAN.R-project.org/package=tidyr.” tibble “Müller K, Wickham H (2022). tibble: Simple Data Frames. R packageversion 3.1.8, https://CRAN.R-project.org/package=tibble.” ggplot2 “Wickham H (2016). ggplot2: Elegant Graphics for Data Analysis.Springer-Verlag New York. ISBN 978-3-319-24277-4,https://ggplot2.tidyverse.org.” tidyverse “Wickham H, Averick M, Bryan J, Chang W, McGowan LD, François R,Grolemund G, Hayes A, Henry L, Hester J, Kuhn M, Pedersen TL, Miller E,Bache SM, Müller K, Ooms J, Robinson D, Seidel DP, Spinu V, Takahashi K,Vaughan D, Wilke C, Woo K, Yutani H (2019). “Welcome to the tidyverse.”Journal of Open Source Software, 4(43), 1686.doi:10.21105/joss.01686 https://doi.org/10.21105/joss.01686.”