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        Note that additional data was saved in multiqc_data when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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        Report generated on 2017-11-02, 20:25 based on data in: /work/02189/rmharris/IntProWT/02_filtrimmedreads

        General Statistics

        Showing 54/54 rows and 3/3 columns.
        Sample NameFrag Length% AlignedM Aligned
        142C_CA1_S_S19_L003_R1_001.filtrim
        202.2bp
        60.4%
        0.0
        142C_DG_S_S21_L003_R1_001.filtrim
        213.2bp
        57.4%
        0.0
        143A_CA3_1_S35_L002_R1_001.filtrim
        201.1bp
        77.2%
        0.2
        143A_DG_1_S36_L002_R1_001.filtrim
        199.2bp
        81.2%
        0.0
        143B_CA1_1_S37_L002_R1_001.filtrim
        200.2bp
        78.0%
        0.0
        143B_DG_1_S38_L002_R1_001.filtrim
        201.2bp
        68.6%
        0.0
        143C_CA1_1_S39_L002_R1_001.filtrim
        198.5bp
        83.1%
        0.1
        143C_CA1_S_S20_L003_R1_001.filtrim
        206.8bp
        76.9%
        0.0
        143C_DG_S_S22_L003_R1_001.filtrim
        220.5bp
        56.2%
        0.0
        143D_CA1_3_S40_L002_R1_001.filtrim
        195.3bp
        58.7%
        0.0
        143D_DG_3_S41_L002_R1_001.filtrim
        194.1bp
        68.7%
        0.0
        144A_CA1_2_S42_L002_R1_001.filtrim
        198.9bp
        73.8%
        0.0
        144A_CA3_2_S43_L002_R1_001.filtrim
        193.0bp
        44.9%
        0.0
        144A_DG_2_S44_L002_R1_001.filtrim
        196.1bp
        73.1%
        0.0
        144B_CA1_1_S45_L002_R1_001.filtrim
        196.2bp
        74.2%
        0.0
        144B_CA3_1_S46_L002_R1_001.filtrim
        214.6bp
        4.8%
        0.0
        144C_CA1_2_S47_L002_R1_001.filtrim
        201.4bp
        72.0%
        0.0
        144C_CA3_2_S48_L002_R1_001.filtrim
        196.1bp
        75.5%
        0.0
        144C_DG_2_S49_L002_R1_001.filtrim
        192.8bp
        66.2%
        0.0
        144D_CA3_2_S50_L002_R1_001.filtrim
        195.7bp
        78.8%
        0.1
        144D_DG_2_S51_L002_R1_001.filtrim
        197.1bp
        79.3%
        0.1
        145A_CA1_2_S52_L002_R1_001.filtrim
        195.6bp
        81.9%
        0.0
        145A_CA3_2_S53_L002_R1_001.filtrim
        197.8bp
        51.8%
        0.0
        145A_DG_2_S54_L002_R1_001.filtrim
        207.6bp
        73.4%
        0.0
        145B_CA1_1_S55_L002_R1_001.filtrim
        200.5bp
        63.3%
        0.0
        145B_DG_1_S57_L002_R1_001.filtrim
        203.2bp
        64.2%
        0.1
        146A_CA1_2_S58_L003_R1_001.filtrim
        194.7bp
        77.2%
        0.0
        146A_CA3_2_S59_L003_R1_001.filtrim
        201.5bp
        73.8%
        0.0
        146A_DG_2_S60_L003_R1_001.filtrim
        202.3bp
        70.3%
        0.0
        146B_CA1_2_S61_L003_R1_001.filtrim
        201.2bp
        58.9%
        0.0
        146B_CA3_2_S62_L003_R1_001.filtrim
        200.1bp
        73.9%
        0.0
        146B_DG_2_S63_L003_R1_001.filtrim
        191.6bp
        19.7%
        0.0
        146C_CA1_4_S64_L003_R1_001.filtrim
        202.3bp
        22.1%
        0.0
        146C_DG_4_S66_L003_R1_001.filtrim
        197.3bp
        57.6%
        0.0
        146D_CA1_3_S67_L003_R1_001.filtrim
        198.4bp
        28.3%
        0.0
        146D_CA3_3_S68_L003_R1_001.filtrim
        196.7bp
        68.0%
        0.0
        146D_DG_3_S69_L003_R1_001.filtrim
        205.8bp
        15.9%
        0.0
        147C_CA1_3_S70_L003_R1_001.filtrim
        198.3bp
        65.6%
        0.0
        147C_CA3_3_S71_L003_R1_001.filtrim
        203.3bp
        77.0%
        0.0
        147C_DG_3_S72_L003_R1_001.filtrim
        202.5bp
        73.7%
        0.0
        147D_CA3_1_S74_L003_R1_001.filtrim
        202.5bp
        78.6%
        0.0
        147D_DG_1_S75_L003_R1_001.filtrim
        214.8bp
        74.7%
        0.0
        147_CA1_4_S76_L003_R1_001.filtrim
        193.2bp
        27.1%
        0.0
        147_CA3_4_S77_L003_R1_001.filtrim
        215.3bp
        42.0%
        0.0
        147_DG_4_S78_L003_R1_001.filtrim
        205.2bp
        14.1%
        0.0
        148A_CA1_3_S79_L003_R1_001.filtrim
        196.6bp
        77.5%
        0.0
        148A_CA3_3_S80_L003_R1_001.filtrim
        195.9bp
        81.3%
        0.0
        148A_DG_3_S81_L003_R1_001.filtrim
        201.4bp
        70.7%
        0.0
        148B_CA1_4_S82_L003_R1_001.filtrim
        160.8bp
        33.0%
        0.0
        148B_CA3_4_S83_L003_R1_001.filtrim
        201.2bp
        10.1%
        0.0
        148B_DG_4_S84_L003_R1_001.filtrim
        197.8bp
        32.2%
        0.0
        148_CA1_2_S85_L003_R1_001.filtrim
        203.3bp
        63.7%
        0.0
        148_CA3_2_S86_L003_R1_001.filtrim
        205.7bp
        75.4%
        0.0
        148_DG_2_S87_L003_R1_001.filtrim
        202.8bp
        66.3%
        0.0

        Kallisto

        Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data.

        loading..

        MultiQC v1.0 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.