Example Commands
CM++
python3 -m hm01.cm -i network.tsv -e clustering.tsv -o output.tsv -c leiden -g 0.5 --threshold 1log10 --nprocs 4 --quiet
- Runs CM++ on a Leiden with resolution 0.5 clustering with connectivity threshold
log10(n)(Every cluster with connectivity over the log of the number of nodesnis considered "well-connected")
python3 -m hm01.cm -i network.tsv -e clustering.tsv -o output.tsv -c ikc -k 10 --threshold 1log10 --nprocs 4 --quiet
- Similar idea but with IKC having hyperparameter
k=10.
CM Pipeline
- Then from the root of this repository run:
python -m main pipeline.json