Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the `cobra.io.sbml.validate_sbml_model` function or via the online validator at https://sbml.org/validator_servlet/ .
`(model, errors) = validate_sbml_model(filename)`
If the model is valid and cannot be read please open an issue at https://github.com/opencobra/cobrapy/issues .
Line 368, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C31H56NO13*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 1250, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C14H25OS*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 1355, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'Fe2S2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 1390, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'Fe2S2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 2342, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C30H55N3O9PS*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 2349, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C14H27OS*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 2363, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C18H33OS*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 2370, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C16H29OS*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3189, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C25H46NO8*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3651, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C5H9O10P2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3658, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C5H9O13P3*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3665, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C16H31O2S*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3693, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C2H5O2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3700, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C2H3O2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3707, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C8H14NOS2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3714, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C9H19N2OS2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3721, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C8H16NOS2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3728, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C7H11N3O3S2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3735, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C7H9N3O3S2*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3742, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C17H27N5O4S*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3749, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C18H26N5O6S*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3756, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C11H16O10*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3763, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C17H26O15*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3770, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C50H85N3O26*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3777, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C56H95N3O31*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3826, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C80H124N16O43*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3833, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C77H119N15O42*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3840, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C74H114N14O41*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3847, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C74H114N14O41*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2
Line 3854, Column 6 - #2020303: The value of attribute 'fbc:chemicalFormula' on the SBML <species> object must be set to a string consisting only of atomic names or user defined compounds and their occurrence.
Reference: L3V1 Fbc V3 Section 3.4
Encountered '*' when expecting a capital letter. The chemicalFormula 'C71H109N13O40*' has incorrect syntax.
- Category: SBML component consistency, Severity: 2