a function to cut tree using assigned variant as branch-length on edge — Add_tree_cut,mitoTracing-method • redeemR

a function to cut tree using assigned variant as branch-length on edge

# S4 method for mitoTracing
Add_tree_cut(
  mitoTracing = DN4_stemcell_mitoTracing.seed.verysensitive,
  MinCell = 30,
  N = 1,
  prob.cut = 0.3,
  Dumpcut = 100
)

Arguments

mitoTracing: Need to have had the tree built
MinCell: The minimum number of cells in each clone, otherwise merge with sibling
N: branch length to cut the tree
Dumpcut: Number of can be tolerated to be removed to fulfill the right side. The small value-> Less unassignment, big clones

Value