library(scMitoTracing)
#> Warning: replacing previous import 'Matrix::expand' by 'ggtree::expand' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'ape::rotate' by 'ggtree::rotate' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'dplyr::combine' by 'gridExtra::combine' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'dplyr::union' by 'igraph::union' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'ape::ring' by 'igraph::ring' when loading
#> 'scMitoTracing'
#> Warning: replacing previous import 'ape::mst' by 'igraph::mst' when loading
#> 'scMitoTracing'
#> Warning: replacing previous import 'dplyr::as_data_frame' by
#> 'igraph::as_data_frame' when loading 'scMitoTracing'
#> Warning: replacing previous import 'ape::edges' by 'igraph::edges' when loading
#> 'scMitoTracing'
#> Warning: replacing previous import 'ape::degree' by 'igraph::degree' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'dplyr::groups' by 'igraph::groups' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'igraph::diversity' by 'phangorn::diversity'
#> when loading 'scMitoTracing'
#> Warning: replacing previous import 'ape::where' by 'pryr::where' when loading
#> 'scMitoTracing'
#> Warning: replacing previous import 'igraph::compose' by 'pryr::compose' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'Matrix::cov2cor' by 'stats::cov2cor' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'igraph::decompose' by 'stats::decompose'
#> when loading 'scMitoTracing'
#> Warning: replacing previous import 'dplyr::filter' by 'stats::filter' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'dplyr::lag' by 'stats::lag' when loading
#> 'scMitoTracing'
#> Warning: replacing previous import 'Matrix::toeplitz' by 'stats::toeplitz' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'Matrix::update' by 'stats::update' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'igraph::spectrum' by 'stats::spectrum' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'igraph::as_data_frame' by
#> 'tibble::as_data_frame' when loading 'scMitoTracing'
#> Warning: replacing previous import 'igraph::parent' by 'tidytree::parent' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'stats::filter' by 'tidytree::filter' when
#> loading 'scMitoTracing'
#> Warning: replacing previous import 'phytools::read.newick' by
#> 'treeio::read.newick' when loading 'scMitoTracing'
#> Warning: replacing previous import 'ape::drop.tip' by 'treeio::drop.tip' when
#> loading 'scMitoTracing'