
rule all:
    input:
        "test_R1_/fastq_stats/test_R1_.json"

rule fastq_stats:
    input:
        "{sample}.fastq.gz"
    output:
        gc="{sample}/fastq_stats/{sample}_gc.png",
        boxplot="{sample}/fastq_stats/{sample}_boxplot.png",
        json="{sample}/fastq_stats/{sample}.json"
    params:
        max_reads=500000
    wrapper:
        "main/wrappers/fastq_stats"


