Package: epicrop
Type: Package
Title: Simulation Modelling of Crop Diseases Using a Susceptible-Exposed-Infectious-Removed (SEIR) Model
Version: 0.0.2
DOI: 10.5281/zenodo.5070395
Authors@R: c(
    person(given = "Adam H.",
           family = "Sparks",
           role = c("cre", "aut"),
           email = "adamhsparks@gmail.com",
           comment = c(ORCID = "0000-0002-0061-8359")),
    person(given = "Robert",
           family = "Hijmans",
           role = c("aut", "trl"),
           email = "robert.hijmans@gmail.com",
           comment = c("Original R implementation",
                     c(ORCID = "0000-0001-5872-2872"))),
    person(given = "Serge",
           family = "Savary",
           role = c("aut", "ccp"),
           email = "serge.savary@toulouse.inra.fr",
           comment = c("Model conception and development in Stella",
                     c(ORCID = "0000-0002-6867-180X"))),
    person(given = "Ireno",
           family = "Pangga",
           role = c("aut", "trl"),
           email = "ibpangga@yahoo.com",
           comment = "Model conception, development in Stella and original R
           implementation"),
    person(given = "Jorrel",
           family = "Aunario",
           role = c("aut", "trl"),
           email = "j.aunario@irri.org",
           comment = "Original R implementation"),
    person(given = "Aji",
           family = "Sukarta",
           role = "ctb",
           email = "aji.ixb@gmail.com",
           comment = "Helped fix bug related to SEIR model and establishment
           date"),
    person(given = "Emerson",
           family = "Del Ponte",
           role = "ctb",
           email = "delponte@ufv.br",
           comment = c("Suggested fixes for several typos in the documentation",
                     c(ORCID = "0000-0003-4398-409X"))))
Description: Generic simulation modelling of crop diseases using a Susceptible-
    Exposed-Infectious-Removed ('SEIR') model.  This type of model was first
    described in botanical epidemiology by Zadoks (1971)
    <doi:10.1094/Phyto-61-600> and implemented in the 'EPIRICE' model by Savary
    et al. (2012) <doi:10.1016/j.cropro.2011.11.009> detailing the model's
    development, use and results from modeling global unmanaged
    epidemics of rice diseases for five major rice diseases, bacterial blight,
    brown spot, leaf blast, sheath blight and tungro.  Specific functions are
    provided to simulate all of these diseases with a generic 'SEIR' model
    function that is suitable for parameterising for use with other pathosystems
    as demonstrated in Savary et al. 2012.
License: GPL-3 + file LICENSE
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE, roclets = c("collate", "namespace", "rd",
    "roxyglobals::global_roclet"))
Encoding: UTF-8
NeedsCompilation: no
ByteCompile: TRUE
URL: https://github.com/adamhsparks/epicrop/
BugReports: https://github.com/adamhsparks/epicrop/issues
Depends:
    R (>= 3.5.0)
Imports:
    data.table,
    nasapower (>= 4.0),
    stats
Suggests:
    dplyr,
    furrr,
    ggplot2,
    ggrepel,
    ggspatial,
    knitr,
    lubridate,
    microbenchmark,
    pander,
    purrr,
    rmarkdown,
    roxyglobals,
    spelling,
    testthat,
    tidyr,
    vcr (>= 0.6.0)
VignetteBuilder: knitr
Language: en-US
X-schema.org-applicationCategory: Tools
X-schema.org-keywords: rice, wheat, botanical-epidemiology, disease, model,
    seir, agricultural-modelling, agricultural-modeling, crop-protection,
    agricultural-research, model, modelling, modeling, seir-model
Config/roxyglobals/filename: globals.R
Config/roxyglobals/unique: FALSE
