Published October 10, 2023
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A new species of Trimma of the T. taylori species group (Teleostei: Gobiidae) from the Red Sea, Indian Ocean
- 1. Curator Emeritus, Department of Natural History, Royal Ontario Museum, 100 Queen's Park, Toronto, Ont., Canada M5S 2C6. Professor Emeritus, Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, Ont., Canada M5S 1A1. priolepis@ gmail.com; https://orcid.org/0000-0003-3361-3252
- 2. Senckenberg Research Institute and Natural History Museum Frankfurt, Senckenberganlage 25, 60325 Frankfurt a.M., Germany. Station of Naturalists, Omsk, Russia.
- 3. Senckenberg Research Institute and Natural History Museum Frankfurt, Senckenberganlage 25, 60325 Frankfurt a.M., Germany. Station of Naturalists, Omsk, Russia. & Tilman.Alpermann@senckenberg.de; https://orcid.org/0000-0002-8723-4576
Description
Winterbottom, Richard, Bogorodsky, Sergey V., Alpermann, Tilman J. (2023): A new species of Trimma of the T. taylori species group (Teleostei: Gobiidae) from the Red Sea, Indian Ocean. Zootaxa 5353 (3): 250-264, DOI: 10.11646/zootaxa.5353.3.3, URL: http://dx.doi.org/10.11646/zootaxa.5353.3.3
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- URL
- https://www.checklistbank.org/dataset/272439
- LSID
- urn:lsid:zoobank.org:pub:D86F6912-517B-4E7A-9235-E2D63BE92CB9
- LSID
- urn:lsid:plazi.org:pub:C808FFC6FFF65B4B49654D7AFFB9FFD7
- URL
- http://publication.plazi.org/id/C808FFC6FFF65B4B49654D7AFFB9FFD7
References
- Allen, G.R. (2015) Four new species of Trimma (Pisces: Gobiidae) from Papua New Guinea and Indonesia. Journal of the Ocean Science Foundation, 14, 28-48. https://doi.org/10.5281/zenodo.1037603
- Boc, A., Diallo, A.B. & Makarenkov, V. (2012) T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks. Nucleic Acids Research, 40 (W1), W573-W579. https://doi.org/10.1093/nar/gks485
- Bogorodsky, S.V., Suzuki, T. & Mal, A.O. (2016) Description of a new species of Priolepis (Perciformes: Gobiidae) from the Red Sea, a new record of Priolepis compita, and a distributional range extension of Trimma fishelsoni. Zootaxa, 4150 (2), 168-184. https://doi.org/10.11646/zootaxa.4150.2.5
- Delrieu-Trottin, E., Williams, J.T., Pitassy, D., Driskell, A., Hubert, N., Viviani, J., Cribb, T.H., Espiau, B., Galzin, R., Kulbicki, M., de Loma, T.L., Meyer, C., Mourier, J., Mou-Tham, G., Parravicini, V., Plantard, P., Sasal, P., Siu, G., Tolou, N., Veuille, M., Weigt, L. & Planes, S. (2019) A DNA barcode reference library of French Polynesian shore fishes. Scientific Data, 6 (1), 114. https://doi.org/10.1038/s41597-019-0123-5
- Frandsen, P.B., Calcott, B., Mayer, C. & Lanfear, R. (2015) Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates. BMC Evolutionary Biology, 15 (1), 13. https://doi.org/10.1186/s12862-015-0283-7
- Geiger, M.F., Herder, F., Monaghan, M.T., Almada, V., Barbieri, R. & Bariche, M. (2014) Spatial heterogeneity in the Mediterranean Biodiversity Hotspot affects barcoding accuracy of its freshwater fishes. Molecular Ecology Resources, 14 (6), 1210-1221. https://doi.org/10.1111/1755-0998.12257
- Golani, D. & Fricke, R. (2018) Checklist of the Red Sea fishes with delineation of the Gulf of Suez, Gulf of Aqaba, endemism and Lessepsian migrants. Zootaxa, 4509 (1), 1-215. https://doi.org/10.11646/zootaxa.4509.1.1
- Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology, 59 (3), 307- 321. https://doi.org/10.1093/sysbio/syq010
- Hoese, D.F., Bogorodsky, S.V. & Mal, A.O. (2015) Description of a new species of Trimma (Perciformes: Gobiidae) from the Red Sea, with a discussion of the generic separation of Trimma and Priolepis with discussion of sensory papillae terminology. Zootaxa, 4027 (4), 538-550. https://doi.org/10.11646/zootaxa.4027.4.4
- Isari, S., Pearman, J.K., Casas, L., Michell, C.T., Curdia, J., Berumen, M.L. & Irigoien, X. (2017) Exploring the larval fish community of the central Red Sea with an integrated morphological and molecular approach. PLoS ONE, 12 (8), e0182503. https://doi.org/10.1371/journal.pone.0182503
- Ivanova, N.V., de Waard, J. & Hebert, P.D.N. (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes, 6, 998-1002. https://doi.org/10.1111/j.1471-8286.2006.01428.x
- Ivanova, N.V., Zemlak, T.S., Hanner, R.H. & Hebert, P.D.N. (2007) Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes, 7 (4), 544-548. https://doi.org/10.1111/j.1471-8286.2007.01748.x
- Jordan, D.S. & Seale, A. (1906) The fishes of Samoa. Description of the species found in the archipelago, with a provisional check-list of the fishes of Oceania. Bulletin of the Bureau of Fisheries, 25, 173-455, index 457-488, pls. 33 53. [for 1905]
- Katoh, MK., Misawa, K. & Kuma, MK. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066. https://doi.org/10.1093/nar/gkf436
- Lanfear, R., Calcott, B., Kainer, D., Mayer, C. & Stamatakis,A. (2014). Selecting optimal partitioning schemes for phylogenomic datasets. BMC Evolutionary Biology, 14 (1), 82. https://doi.org/10.1186/1471-2148-14-82
- Lanfear, R., Frandsen, P.B., Wright, A. M., Senfeld, T. & Calcott, B. (2016) Partition Finder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution, 34 (3), 772-773. https://doi.org/10.1093/molbev/msw260
- Lobel, P.S. (1979) Description of a new Hawaiian gobiid fish of the genus Trimma. Breviora, Museum of Comparative Zoology, 456, 1-15, https://www.biodiversitylibrary.org/item/22496
- Messing, J. (1983) New M13 vectors for cloning. Methods in Enzymology, 101, 20-78. https://doi.org/10.1016/0076-6879(83)01005-8
- Pyle, R.L., Kosaki, R.K., Pinheiro, H.T., Rocha, L.A., Whitton, R.K. & Copus, J.M. (2019) Fishes: biodiversity. In: Loya, Y., Puglise, K.A. & Bridge, T.C.L. (Eds.), Mesophotic coral ecosystems. Springer, New York, New York, pp. 749-777. https://doi.org/10.1007/978-3-319-92735-0_40
- Randall, J.E. (1994) Twenty-two new records of fishes from the Red Sea. Fauna of Saudi Arabia, 14, 259-275.
- Ratnasingham, S. & Hebert, P.D.N. (2013) A DNA-based Registry for all animal species: The Barcode Index Number (BIN) System. PLoS ONE, 8 (8), e66213. https://doi.org/10.1371/journal.pone.0066213
- Ryanskiy, A. (2022) Red Sea marine life. Andrey Ryanskiy publisher, s.l., 200 pp.
- Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models". Bioinformatics, 22 (21), 2688-2690. https://doi.org/10.1093/bioinformatics/btl446
- Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post analysis of large phylogenies. Bioinformatics, 30 (9), 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Wada, H., Takase, W. & Senou, H. (2022) Trimma albicaudatum, a new species of pygmygoby from Sagami Bay, Honshu, Japan (Teleostei: Gobiidae: Gobiinae). Ichthylogical Research, 70, 359-367. https://doi.org/10.1007/s10228-022-00897-8
- Ward, R.D., Zemlak, T.S., Innes, B.H., Last, P.R. & Hebert, P.D.N. (2005) DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B: Biological Sciences, 360 (1462), 1847-1857. https://doi.org/10.1098/rstb.2005.1716
- Winterbottom, R. (1984) A review of the gobiid fish genus Trimma from the Chagos Archipelago, central Indian Ocean, with the description of seven new species. Canadian Journal of Zoology, 62, 695-715. https://doi.org/10.1139/z84-101
- Winterbottom, R. (1995) Red Sea gobiid fishes of the genus Trimma, with the description of two new species. Revue Francaise d'aquariologie, 22, 93-98.
- Winterbottom, R. (2011) Six new species of the genus Trimma (Percomorpha; Gobiidae) from the Raja Ampat Islands, Indonesia. aqua, International Journal of Ichthyology, 17 (3), 127-162.
- Winterbottom, R. (2016) Trimma tevegae and T. caudomaculatum revisited and redescribed (Acanthopterygii, Gobiidae), with descriptions of three new similar species from the western Pacific. Zootaxa, 4144 (1), 1-53. https://doi.org/10.11646/zootaxa.4144.1.1
- Winterbottom, R. (2019) An illustrated key to the described valid species of Trimma (Teleostei: Gobiidae). Journal of the Ocean Science Foundation, 34, 1-61. https://doi.org/10.5281/zenodo.3525430
- Winterbottom, R., Burridge, M., Erdmann, M.V., Hanner, R.H., Zur, M., Steinke, C. & Choffe, K. (2020) The cryptic cornucopia revisited -an extended analysis of the COI gene in the gobiid fish genus Trimma (Percomorpha; Gobiiformes). Journal of the Ocean Science Foundation, 36, 91-132. https://doi.org/10.5281/zenodo.4403739
- Winterbottom, R., Erdmann, M.V. & Cahyani, N.K.D. (2015) New species of Trimma (Actinopterygii, Gobiidae) from Indonesia, with comments on head papillae nomenclature. Zootaxa, 3973 (2), 201-226. https://doi.org/10.11646/zootaxa.3973.2.1
- Winterbottom, R., Hanner, R.H., Burridge, M. & Zur, M. (2014) A cornucopia of cryptic species -a DNA barcode analysis of the gobiid fish genus Trimma (Percomorpha, Gobiiformes). ZooKeys, 381, 79-111. https://doi.org/10.3897/zookeys.381.6445
- Winterbottom, R. & Hoese, D.F. (2015) A revision of the Australian species of Trimma (Actinopterygii: Gobiidae), with descriptions of six new species and redescriptions of twenty -three valid species. Zootaxa, 3934 (1), 1-102. https://doi.org/10.11646/zootaxa.3934.1.1
- Winterbottom, R. & Pyle, R.L. (2022a) A new species of Trimma (Pisces: Gobiidae) from the deep reefs of Palau, western Pacific Ocean. Zootaxa, 5094 (4), 595-600. https://doi.org/10.11646/zootaxa.5094.4.5
- Winterbottom, R. & Pyle, R.L. (2022b) A new species of Trimma (Teleostei: Gobiidae) from the deep reefs of Vanuatu, western Pacific Ocean. Journal of the Ocean Science Foundation, 39, 2-8. https://doi.org/10.5281/zenodo.6456585