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Conflicting signals in phylogenetic relationships and taxonomy of Anatolian endemic Silene sordida (Caryophyllaceae)
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- 1. University of Dicle, Faculty of Sciences, Department of Molecular Biology and Genetic, Diyarbakır-Turkey & University of Gothenburg, Faculty of Sciences, Department of Biological and Environmental Sciences, Gothenburg-Sweden & ilgimd@gmail.com; https://orcid.org/0000-0002-2103-4141
- 2. University of Celal Bayar, Faculty of Sciences, Department of Biology, Manisa-Turkey & kemalyil@gmail.com; https://orcid.org/0000-0003-4753-5005
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Toprak, Zeynep, Yildiz, Kemal (2022): Conflicting signals in phylogenetic relationships and taxonomy of Anatolian endemic Silene sordida (Caryophyllaceae). Phytotaxa 548 (2): 199-222, DOI: 10.11646/phytotaxa.548.2.5
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- urn:lsid:plazi.org:pub:A80EAC19FFB9366CA76C7463FFA7865A
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- http://publication.plazi.org/id/A80EAC19FFB9366CA76C7463FFA7865A
References
- Aydin, Z., Ertekin, A.S., Langstrom, E. & Oxelman, B. (2014a) A new section of Silene Caryophyllaceae) including a new species from South Anatolia, Turkey. Phytotaxa 178 (2): 98-112. https://doi.org/10.11646/phytotaxa.178.2.2
- Aydin, Z., Marcussen, T., Ertekin, A.S. & Oxelman, B. (2014b) Marginal likelihood estimate comparisons to obtain optimal species delimitations in Silene sect. Cryptoneurae (Caryophyllaceae). PLoS One 9 (12): e116266. https://doi.org/10.1371/journal.pone.0116266
- Aytac, Z., Kandemir, A. & Fisne, A. (2015) Silene kemahensis (Caryophyllaceae): A new species from Erzincan (Turkey), Bagbahce Bilim Dergisi 2: 37-42.
- Barbey, W. (1886) Additions a la flore de Carpathos et de Lycie. Bulletin de la Societe Vaudoise des Sciences Naturelles 21 (93): 219- 224.
- Battandier, J.A. & Trabut, L. (1888) Flore de I' Algerie, vol. 1. Bailliere, Alger-Paris, 825 pp.
- Boissier, P.E. (1842-1854) Diagnoses Plantarum Orientalium novarum Ser. 1, fascs. 1-7B. Herman, Lipsiae, 91 pp.
- Bouckaert, R., Heled, J., Kuhnert, D., Vaughan, T., Wu, C-H., Xie, D., Suchard, MA., Rambaut, A. & Drummond, A.J. (2014) BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Computational Biology 10 (4): e1003537. https://doi.org/10.1371/journal.pcbi.1003537
- Brotero, F.A. (1805) Flora Lusitanica seu Plantarum, quae in Lusitania vel Sponte Crescunt, vel frequentius coluntur, ex florum praesertim sexubus systematice distributarum, synopsis, Vol. 2. Typographia Regia, Lisboa, 557 pp. https://doi.org/10.5962/bhl.title.45110
- Burman, N.L. (1768) Flora indica: cui accedit series zoophytorumindicorum, nec non Prodromus florae capensis. Cornelius Haak, Leiden, 250 pp. https://doi.org/10.5962/bhl.title.60581
- Carlstrom, A. (1986) New Taxa and Notes from the SE Aegean Area and SW Turkey. Willdenowia 16: 73-78.
- Celenk, S., Dirmenci, T., Malyer, H. & Bicakci, A. (2008) A palynological study of the genus Nepeta L. (Lamiaceae). Plant Systematics and Evolution 276: 105-123. https://doi.org/10.1007/s00606-008-0062-7
- Chowdhuri, P.K. (1957) Studies in the genus Silene. Notes from the Royal Botanic Garden, Edinburgh 22: 221-278.
- Coode, M.J.E. & Cullen, J. (1967) Silene L. In: Davis, P.H. (Ed.) Flora of Turkey and the East Aegean Islands, Vol. 2. Edinburgh: Edinburgh University Press, pp. 179-222.
- Dadandi, M.Y. & Yildiz, K. (2015) Seed morphology of some Silene L. (Caryophyllaceae) species collected from Turkey. Turkish Journal of Botany 39: 280-297. https://doi.org/10.3906/bot-1307-35
- Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9 (8): 772. https://doi.org/10.1038/nmeth.2109
- Davis, P.H. (1971) Distribution patterns in Anatolia with particular reference to Anatolia. In: Davis, P.H., Harper, P.C., Hedge, J.C. (eds.) Plant life of South West Asia. Edinburgh, Botanical Society of Edinburgh, pp. 15-27.
- Davis, P.H., Mill, R.R. & Tan, K. (1988) Silene L. In: Davis, P.H., Mill, R.R., Tan, K. (Eds.) Flora of Turkey and the East Aegean Islands (Suppl. 1), Vol. 10. 1st ed. Edinburgh, Edinburgh University Press, pp. 76-81.
- Desfeux, C. & Lejeune, B. (1996) Systematics of Euromediterranean Silene (Caryophyllaceae): evidence from a phylogenetic analysis using ITS sequences. Comptes Rendus de l Academie des Sciences. Serie III, Sciences de la Vie (Paris) 319: 351-358.
- Eggens, F., Popp, M., Nepokroeff, M., Wagner, W.L. & Oxelman, B. (2007) The origin and number of introductions of the Hawaiian endemic Silene species (Caryophyllaceae). American Journal of Botany 94: 210-218. https://doi.org/10.3732/ajb.94.2.210
- Erixon, P. & Oxelman, B. (2008) Reticulate or tree-like chloroplast DNA evolution in Sileneae (Caryophyllaceae)? Molecular Phylogenetics and Evolution 48: 313-325. https://doi.org/10.1016/j.ympev.2008.04.015
- Fenzl, E. (1842) Pugillus Plantarum Novarum Syriae et Tauri Occidentalis Primus, Vol. 1. Fridericum Beck, Universitatis Bibliopola, Wien, 18 pp.
- Firat, M. & Yildiz, K. (2016a) Silene miksensis (Caryophyllaceae), a new species from eastern Anatolia. Phytotaxa 273: 283-292. https://doi.org/10.11646/phytotaxa.273.4.4
- Firat, M. & Yildiz, K. (2016b) Silene konuralpii (Sect. Spergulifoliae, Caryophyllaceae), a new species from eastern Anatolia. Phytotaxa 288: 214-226. https://doi.org/10.11646/phytotaxa.288.3.2
- Ghahremaninejad, F., Pejhanmehr, M., Attar, F., Daneshian, J. & Edalatiyan, M.N. (2014) The importance of palynology in the taxonomy of genus Silene, based on pollen morphology. Rostaniha 15 (2): 94-109.
- Ghazanfar, S.A. (1983) Seed characters as diagnostic in the perennial sections of the genus Silene L. (Family Caryophyllaceae)-I. Pakistan Journal of Botany 15: 7-12.
- Greuter, W. (1995) Silene (Caryophyllaceae) in Greece: A subgeneric and sectional classification. Taxon 44: 543-581. https://doi.org/10.2307/1223499
- Greuter, W. (1997) Silene L. In: Strid, A. & Tan, K. (Eds.) Flora Hellenica, Vol. 1, Koenigstein: Koeltz Scientific Books, pp. 239-323.
- Guner, E.D. & Duman, H. (2016) A new species from Turkey, Silene bilgili (Caryophyllaceae). Phytotaxa 246: 293-299. https://doi.org/10.11646/phytotaxa.246.4.5
- Huber-Morath, A. & Reese, H. (1943) De Flora Occidentali. Feddes Repertorium Specierum Novarum Regni Vegetabilis 52: 40-51. https://doi.org/10.1002/fedr.19430520104
- Iamonico, D. (2018) A conspectus of Silene sect. Lasiocalycinae (Caryophyllaceae). Phyton (Horn, Austria) 57 (1-2): 113-127. https://doi.org/10.12905/0380.phyton57-2018-0113
- Iamonico, D. (2021) The taxonomic position of Silene multinervia (Caryophyllaceae), endemic to California and northernwestern Mexico, and description of section Californicae, sect. nov. Rhodora 122 (991): 202-213. https://doi.org/10.3119/20-15
- Jafari, F., Mirtadzadini, M., Gholipour, A., Rabeler, R.K., Oxelman, B. & Zarre, S. (2019) Notes on the genus Silene (Caryophyllaceae, Sileneae) in Iran. Phytotaxa 425 (1): 35-48. https://doi.org/10.11646/phytotaxa.425.1.3
- Jafari, F., Zarre, S., Gholipour, A., Eggens, F., Rabeler, R.K. & Oxelman, B. (2020) A new taxonomic backbone for the infrageneric classification of the species-rich genus Silene (Caryophyllaceae). Taxon 69: 337-368. https://doi.org/10.1002/tax.12230
- Kuh, M., Yildiz, K. & Minareci, E. (2017) A taxonomic study of the Silene sections Behenantha and Dichotomae (Caryophyllaceae) in Turkey based on the micromorphology of their seed and pollen. Turkish Journal of Botany 41: 493-504. https://doi.org/10.3906/bot-1610-23
- Lazkov, G.A. (2003) The genus Silene (Caryophyllaceae) in the Flora of Eurasia (systematics, distribution, history). Ph.D. thesis. Komarov Institute, St Petersburg, 37 pp.
- Linnaeus, C. (1753) Species Plantarum, Vol. 1. Laurentii Salvii, Holmiae, 560 pp.
- Linnaeus, C. (1763) Species plantarum ed. 2, Vol. 2. Impensis Direct, Laurentii Salvii, Holmiae [Stockholm], 999 pp.
- Linnaeus, C. filius (1782) Supplementum Plantarum Systematis Vegetabilium Editionis Decimae Tertiae, Generum Plantarum Editiones Sextae, et Specierum Plantarum Editionis Secundae. Impensis Orphanotrophei, Brunsvigae, 241 pp. https://doi.org/10.5962/bhl.title.555
- Manning, J.C. & Goldblatt, P. (2012a) A taxonomic revision of the southern African native and naturalized species of Silene L. (Caryophyllaceae). Bothalia 42: 147-186. https://doi.org/10.4102/abc.v42i2.14
- Marcussen, T., Oxelman, B., Skog, A. & Jakobsen, K.S. (2010) Evolution of plant RNA polymerase IV/V genes: evidence of subneofunctionalization of duplicated NRPD2/NRPE2-like paralogs in Viola (Violaceae). BMC Evolutionary Biology 10: 45 https://doi.org/10.1186/1471-2148-10-45
- Martin-Goomez, J.J., Rewicz, A., Rodriguez-Lorenzo, J.L., Janoussek, B. & Cervantes, E. (2020) Seed Morphology in Silene Based on Geometric Models. Plants 2020-9: 1787. https://doi.org/10.3390/plants9121787
- Meikle, R.D., (1977) Silene L. In: Meikle, R.D. (Ed.) Flora of Cyprus, Vol. 1. Bentham-Moxon Trust and Royal Botanic Garden, Kew, pp. 224-252.
- Melzheimer, V. (1977) Biosystematische revision einiger Silene -Arten (Caryophyllaceae) der Balkanhalbinsel (Griechenland). Botanische Jahrbucher fur Systematik 98: 1-92. [in German]
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES science gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop 14: 1-8. https://doi.org/10.1109/GCE.2010.5676129
- Naciri, Y., Du Pasquier, P.-E., Lundberg, M., Jeanmonod, D. & Oxelman, B. (2017) A phylogenetic circumscription of Silene sect. Siphonomorpha (Caryophyllaceae) in the Mediterranean basin. Taxon 66: 91-108. https://doi.org/10.12705/661.5
- Otth, A. (1824) Silene L. In: Candolle, A.P. de (Ed.) Prodromus Systematis Naturalis Regni Vegetabilis, Vol. 1. Treuttel et Wurtz, Parisiis, pp. 367-385.
- Oxelman, B. (1995) A Revision of the Silene sedoides-group (Caryophyllaceae). Willdenowia 25: 143-169.
- Oxelman, B. & Greuter, W. (1997) Silene Sect. Sedoideae Oxelman & Greuter. In: Strid, A. & Tan, K. (Eds.) Flora Hellenica, Vol. 1. Koeltz, Konigstein, pp. 298-302.
- Oxelman, B. & Liden, M. (1995) Generic boundaries in the tribe Sileneae (Caryophyllaceae) as inferred from nuclear rDNA sequences. Taxon 44: 525-542. https://doi.org/10.2307/1223498
- Oxelman, B., Liden, M. & Berglund, D. (1997) Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematics and Evolution 206: 393- 410. https://doi.org/10.1007/BF00987959
- Oxelman, B., Liden, M., Rabeler, R.K. & Popp, M. (2001) A revised generic classification of the tribe Sileneae (Caryophyllaceae). Nordic Journal of Botany, 20: 515-518. https://doi.org/10.1111/j.1756-1051.2000.tb01595.x
- Oxelman, B., Rautenberg, A., Thollesson, M., Larsson, A., Frajman, B., Eggens, F., Petri, A., Aydin, Z., Topel, M. & Brandtberg-Falkman, A. (2013) Sileneae taxonomy and systematics. Available from: https://www.sileneae.info (accessed 12 March 2022).
- Pampanini, R. (1927) Secondo contributo alla conoscenza della flora dell'isola di Rodi. Nuovo Giornale Botanico Italiano Ser.1, 34: 369-380.
- Petri, A. & Oxelman, B. (2011) Phylogenetic relationships within Silene (Caryophyllaceae) Sect. Physolychnis. Taxon 60: 953-968. https://doi.org/10.1002/tax.604002
- Pinar, M.N., Ekici, M., Aytac, Z., Akan, H., Ceter, T. & Alan, S. (2009) Pollen morphology of Astragalus L. sect. Onobrychoidei DC. (Fabaceae) in Turkey. Turkish Journal of Botany 33: 291-303.
- Poiret, J.L.M. (1789) Voyage en Barbarie ou Lettres ecrites de l'Ancienne Numidie. Pendant les annees 1785 & 1786, sur la Religion, les coutumes & les Moeurs des Maures des Arabes-Bedouins; avec un Essai sur l'Histoire Naturelle de ce pays, Vol. 2. J. B. F. Nee de la Rochelle, Paris, 316 pp. https://doi.org/10.5962/bhl.title.13598
- Popp, M. & Oxelman, B. (2007) Origin and evolution of North American polyploid Silene (Caryophyllaceae). American Journal of Botany 94: 330-349. https://doi.org/10.3732/ajb.94.3.330
- Prentice, H.C. (1978) Experimental Taxonomy of Silene section Elisanthe (Caryophyllaceae): Crossing experiments. Botanical Journal of the Linnean Society 77: 203-213. https://doi.org/10.1111/j.1095-8339.1978.tb01399.x
- Punt, W., Hoen, P.P., Blackmore, S., Nilsson, S. & Thomas, A. (2007) Glossary of pollen and spore terminology. Review of Palaeobotany and Palynology 143: 1-81. https://doi.org/10.1016/j.revpalbo.2006.06.008
- Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarization in Bayesian phylogenetics using Tracer v1.7. Systematic Biology 67: 901-904. https://doi.org/10.1093/sysbio/syy032
- Rautenberg, A., Sloan, D.B., Alden, V. & Oxelman, B. (2012) Phylogenetic relationships of Silene multinervia and Silene section Conoimorpha (Caryophyllaceae). Systematic Botany 37: 226-237. https://doi.org/10.1600/036364412X616792
- Rohrbach, P. (1867) Conspectus systematicus specierum generis Silene. Annales des Sciences Naturelles, Botanique series 5, 8 (6): 367-382.
- Rohrbach, P. (1868) Monographie der Gattung Silene. Engelmann, Leipzig, 249 pp. https://doi.org/10.5962/bhl.title.15462
- Sahreen, S., Khan, M.A., Meo, A.A. & Jabeen, A. (2008) Studies on the pollen morphology of the genus Dianthus (Caryophyllaceae) from Pakistan. Biological Diversity and Conservation 1: 89-98.
- Sibthorp, J. & Smith, J.E. (1809) Florae Graecae prodromus; sive Plantarum omnium enumeratio 1 (2). Typis Richardi Taylor, veneunt apud J. White (1806-1813), Londini, 442 pp.
- Sloan, D.B., Oxelman, B., Rautenberg, A. & Taylor, D.R. (2009) Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae. BMC Evolutionary Biology 9: 260. https://doi.org/10.1186/1471-2148-9-260
- Stapf, O. (1886) Beitrage zur Flora von Lycien, Carien und Mesopatamien. Denkschriften der Kaiserlichen Akademie der WissenschaftenMathematisch-Naturwissenschaftliche 51. Aus der Kaiserlich-Koniglichen Hof-und Staatsdruckerei, Wien, 576 pp.
- Stamatakis, A. (2014) RAxML Version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. Bioinformatics 30: 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Stearn, W.T. (1992) Botanical Latin, 4th ed. David & Charles, London, 546 pp.
- Swofford, D.L. (2002) PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0. Sunderland, Massachusetts, Sinauer.
- Swofford, D.L. (2020) Phylogenetic Analysis Using Parsimony (PAUP) (Version 4.0a169). Available from: http://phylosolutions.com/ paup-test/ (accessed 25 April 2022)
- Takhtajan, A.L. (1980) Outline of the classification of flowering plants (Magnoliophyta). Botanical Review 46: 225-359. https://doi.org/10.1007/BF02861558
- Talavera, S. (1988) Nombre y combinaciones nuevas en el genero Silene L. (Caryophyllaceae). Anales del Jardin Botanico de Madrid 45 (1): 361-362.
- Tan, K. & Vural, M. (2000) Silene L. In: Guner, A., Ozhatay, N., Ekim, T. & Baser, K.H.C. (Eds.) Flora of Turkey and the East Aegean Islands (Suppl. 2), Vol. 11. 1st ed. Edinburgh, Edinburgh University Press, pp. 50-53.
- Thiers, B. (2022 [continuously updated]) Index Herbariorum: a global directory of public 22 herbaria and associated staff. New York Botanical Garden's Virtual Herbarium. Available from: http://sweetgum.nybg.org/science/ih/ (accessed 25 April 2022)
- Toprak, Z., Pfeil, B.E., Jones, G., Marcussen, T., Ertekin, A.S. & Oxelman, B. (2016) Species delimitation with DISSECT: Evidence of high species diversity in the Silene aegyptiaca complex (Caryophyllaceae). Molecular Phylogenetics and Evolution 102: 1-8. https://doi.org/10.1016/j.ympev.2016.05.024
- Walker, J.W. (1974a) Evolution of exine structure in the pollen of primitive angiosperms. American Journal of Botan y 61: 891-902. https://doi.org/10.1002/j.1537-2197.1974.tb12315.x
- Walker, J.W. (1974b) Aperture evolution in the pollen of primitive angiosperms. American Journal of Botan y 61: 1112-1137. https://doi.org/10.1002/j.1537-2197.1974.tb12329.x
- Wendelbo, P.B.(1952) Plants from Tirich Mir.A contribution to the flora of Hindukush.Nytt Magasine for Botanik,vol.1. Universitetsforlaget, Oslo, 70 pp.
- Willkomm, H.M. (1854) Icones et Descriptiones Plantarum novarum criticarum et rariorum Europae austro-occidentalis praecipue Hispaniae, vol. 1 (8). Sumtibus A. H. Payne, Leipzig, pp. 73.
- Yildiz, K. (2001) Pollen morphology of some Silene L. (Caryophyllaceae) from Turkey. Pakistan Journal of Botany 33: 13-25.
- Yildiz, K. (2012) Silene L. In: Guner, A., Aslan, S., Ekim, T., Vural, M. & Babac, M.T. (Eds.) Turkiye Bitkileri Listesi (Damarli Bitkiler), Istanbul Nezahat Gokyigit Botanik Bahcesi Yayinlari, pp. 354-365. [in Turkish]
- Yildiz, K. & Cirpici, A. (1998) Seed Morphological Studies in Silene L. from Turkey, Pakistan Journal of Botany 30 (2): 173-188.
- Yildiz, K.& Cirpici,A.H.(2013) Taxonomic revision of Silene (Caryophyllaceae) sections Siphonomorpha, Lasiostemones, Sclerocalycinae, Chloranthae, Tataricae and Otites in Turkey. Turkish Journal of Botany 37: 191-218.
- Yildiz, K., Minareci, E. & Cirpici, A.H. (2009) Karyotypic study on Silene, section Lasiostemones species from Turkey. Caryologia 62: 134-141. https://doi.org/10.1080/00087114.2004.10589678
- Yildiz, K., Cirpici, A. & Dadandi, M.Y. (2010) Pollen morphology of Silene taxa (Caryophyllaceae) four sections from Turkey. Phytologia Balcanica 16: 85-95.
- Yildiz, K., Dadandi, M.Y., Minareci, E. & Cirpici, A. (2011) Pollen morphology of sections Siphonomorpha and Lasiostemones of Silene from Turkey. Turkish Journal of Botany 35: 631-642.
- Yildiz, K., Cirpici, A., Dadandi, M.Y. & Firat, M. (2017) Silene nemrutensis (Caryophyllaceae), a new species from south-eastern Anatolia. Phytotaxa 292 (2): 189-195. https://doi.org/10.11646/phytotaxa.292.2.6