Published May 11, 2022
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Revision of the African cichlid fish genus Ctenochromis (Teleostei, Cichliformes), including a description of the new genus Shuja from Lake Tanganyika and the new species Ctenochromis scatebra from northern Tanzania
Creators
- 1. School of Biological Sciences, University of Bristol, Life Sciences Building, 24 Tyndall Avenue, Bristol, BS8 1TQ, United Kingdom.
- 2. Department of Biological and Marine Sciences, University of Hull, Hull, HU5 7RX, United Kingdom.
- 3. Tanzania Fisheries Research Institute (TAFIRI) P.O. Box 9750, Dar es Salaam, Tanzania.
- 4. School of Biological Sciences, Bangor University, Bangor, Gwynedd, LL57 2UW, United Kingdom.
Description
Genner, Martin J., Hsu, Ling-Lan, Collins, Rupert A., Smith, Alan M., Saxon, Andrew D., Shechonge, Asilatu H., Ngatunga, Benjamin P., Turner, George F. (2022): Revision of the African cichlid fish genus Ctenochromis (Teleostei, Cichliformes), including a description of the new genus Shuja from Lake Tanganyika and the new species Ctenochromis scatebra from northern Tanzania. European Journal of Taxonomy 819: 23-54, DOI: 10.5852/ejt.2022.819.1775, URL: http://zoobank.org/8415bf78-8949-45aa-9436-3ba3f0caeb2b
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- URL
- https://www.checklistbank.org/dataset/55522
- LSID
- urn:lsid:zoobank.org:pub:8415BF78-8949-45AA-9436-3BA3F0CAEB2B
- LSID
- urn:lsid:plazi.org:pub:FFA9C8216020EC395069FFE3653E3347
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- http://publication.plazi.org/id/FFA9C8216020EC395069FFE3653E3347
References
- Bailey R.G. 1966. The dam fisheries of Tanzania. East African Agricultural and Forestry Journal 32: 1-15. https://doi.org/10.1080/00128325.1966.11662082
- Barel C.D.N., Van Oijen M.J.P., Witte F. & Witte-Maas E.L.M. 1977. An introduction to the taxonomy and morphology of the haplochromine Cichlidae from Lake Victoria. Netherlands Journal of Zoology 27: 333-389.
- Borodin N.A. 1936. On a collection of freshwater fishes from Lakes Nyasa, Tanganyika and Viktoria in Central Africa. Zoologische Jahrbucher 68: 1-34.
- Boulenger G.A. 1899. A revision of the African and Syrian fishes of the family Cichlidae - Part II.1. Proceedings of the Zoological Society of London 67: 98-144. https://doi.org/10.1111/j.1469-7998.1899.tb06852.x
- Boulenger G.A. 1915. Catalogue of the Fresh-Water Fishes of Africa in the British Museum (Natural History). Volume 3. Trustees of the British Museum of Natural History, London.
- Carleton K.L., Conte M.A., Malinsky M., Nandamuri S.P., Sandkam B.A., Meier J.I., Mwaiko S., Seehausen O. & Kocher T.D. 2020. Movement of transposable elements contributes to cichlid diversity. Molecular Ecology 29: 4956-4969. https://doi.org/10.1111/mec.15685
- Daget J., Gosse J.P., Teugels G.G. & Thys Van Den Audenaerde D.F.E. 1991. Check List of the Freshwater Fishes of Africa = Catalogue des poissons d'eau douce d'Afrique. CLOFFA 4. Musee royal pour l'Afrique centrale, Tervuren.
- Danecek P., Auton A., Abecasis G., Albers C.A., Banks E., DePristo M.A., Handsaker R.E., Lunter G., Marth G.T., Sherry S.T. & McVean G. 2011. The variant call format and VCFtools. Bioinformatics 27: 2156-2158. https://doi.org/10.1093/bioinformatics/btr330
- Decru E., Vreven E. & Snoeks J. 2017. The occurrence of an Eastern African haplochromine cichlid in the Ituri River (Aruwimi, Congo basin): adaptive divergence in an introduced species? Hydrobiologia 791: 209-220. https://doi.org/10.1007/s10750-016-2857-9
- de Graaf J. 2011. The real Ctenochromis pectoralis. Eggspots 5: 38-39.
- De Vos L.D.G., Seegers L., Taverne L. & Thys van den Audenaerde D.F.E. 2001. L'ichthyofaune du bassin de la Malagarasi (systeme du Lac Tanganyika): une synthese de la connaissance actuelle. Annales du Musee royal de l'Afrique centrale, Serie Sciences zoologiques 285: 117-135.
- Dunz A.R. & Schliewen U.K. 2013. Molecular phylogeny and revised classification of the haplotilapiine cichlid fishes formerly referred to as "Tilapia". Molecular Phylogenetics and Evolution 68: 64-80. https://doi.org/10.1016/j.ympev.2013.03.015
- Edgar R.C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797. https://doi.org/10.1093/nar/gkh340
- Fricke R., Eschmeyer W.N. & van der Laan R. 2021. Eschmeyer's Catalog of Fishes: Genera, Species, References. Available from http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp [accessed 4 Jul. 2021].
- Froese R. & Pauly D. 2021. (eds) FishBase. World Wide Web electronic publication. Available from www.fishbase.org [accessed Jun. 2021].
- Garrison E. & Marth G. 2012. Haplotype-based variant detection from short-read sequencing. Available from https://arxiv.org/abs/1207.3907 [accessed 4 Apr. 2022].
- Geerts M. 2006. Cichlidesque. Actualiteiten en Wetenswaardigheden. Verwikkelingen rond Trematochromis schreyeni. Cichlidae - Journal of the British Cichlid Association 32 (4): 99-100.
- Greenwood P.H. 1979. Towards a phyletic classification of the 'genus' Haplochromis (Pisces, Cichlidae) and related taxa. Part I. Bulletin of the British Museum of Natural History (Zoology) 35: 265-322. https://doi.org/10.5962/bhl.part.20455
- Greenwood P.H. 1980. Towards a phyletic classification of the 'genus' Haplochromis (Pisces, Cichlidae) and related taxa. Part II - The species from Lakes Victoria, Nabugabo, Edward, George and Kivu. Bulletin of the British Museum of Natural History (Zoology) 39: 1-101. https://doi.org/10.5962/bhl.part.13268
- Gunther A. 1894. Descriptions of the reptiles and fishes collected by Mr. E. Coode-Hore on Lake Tanganyika. Proceedings of the Zoological Society of London 1893: 628-632.
- Jordan D.S. 1923. A classification of fishes including families and genera as far as known. Stanford University Publications, University Series, Biological Sciences 3 (2): 77-243. https://doi.org/10.5962/bhl.title.161386
- Kalacska M., Arroyo-Mora J.P., Lucanus O. & Kishe-Machumu M.A. 2017. Land cover, land use, and climate change impacts on endemic cichlid habitats in northern Tanzania. Remote Sensing 9: 623. https://doi.org/10.3390/rs9060623
- Kaufman L. 1996. Ctenochromis pectoralis. The IUCN Red List of Threatened Species 1996: e.T9722A13011299. https://doi.org/10.2305/IUCN.UK.1996.RLTS.T9722A13011299.en
- Koblmuller S., Schliewen U.K., Duftner N., Sefc K.M., Katongo C. & Sturmbauer C. 2008. Age and spread of the haplochromine cichlid fishes in Africa. Molecular Phylogenetics and Evolution 49: 153- 169. https://doi.org/10.1016/j.ympev.2008.05.045
- Kocher T.D., Conroy J.A., McKaye K.R., Stauffer J.R. & Lockwood S.F. 1995. Evolution of NADH dehydrogenase subunit 2 in East African cichlid fish. Molecular Phylogenetics and Evolution 4: 420- 432. https://doi.org/10.1006/mpev.1995.1039
- Konings A. 2015. Tanganyika Cichlids in their Natural Habitat. 3rd edition. Cichlid Press, El Paso, TX.
- Konings A. 2019. Tanganyika Cichlids in their Natural Habitat. 4th edition. Cichlid Press, El Paso, TX.
- Kozlov A.M., Darriba D., Flouri T., Morel B. & Stamatakis A. 2019. RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 35: 4453-4455. https://doi.org/10.1093/bioinformatics/btz305
- Kullander S. & Roberts T. 2011. Out of Lake Tanganyika: endemic lake fishes inhabit rapids of the Lukuga River. Ichthyological Explorations of Freshwaters 22: 355-376.
- Lamboj A. 2004.The Cichlid Fishes of Western Africa . Birgit Schmettkamp Verlag, Bornheim, Germany.
- Li H. 2013. Aligning Sequence Reads, Clone Sequences and Assembly Contigs with BWA-MEM. Available from https://arxiv.org/abs/1303.3997 [accessed 4 Apr. 2022].
- Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G. & Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079. https://doi.org/10.1093/bioinformatics/btp352
- Martin M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet Journal 17: 10-12. https://doi.org/10.14806/ej.17.1.200
- Mayer W.E., Tichy H. & Klein J. 1998. Phylogeny of African cichlid fishes as revealed by molecular markers. Heredity 80: 702-714. https://doi.org/10.1046/j.1365-2540.1998.00347.x
- Meier J.I., Marques D.A., Mwaiko S., Wagner C.E., Excoffier L. & Seehausen O. 2017. Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature Communications 8: 14363. https://doi.org/10.1038/ncomms14363
- Mims M.C., Hulsey C.D., Fitzpatrick B.M. & Streelman J.T. 2010. Geography disentangles introgression from ancestral polymorphism in Lake Malawi cichlids. Molecular Ecology 19: 940-951. https://doi.org/10.1111/j.1365-294X.2010.04529.x
- Okeyo D.O. 1998. Updating names, distribution and ecology of riverine fish of Kenya in the Athi- Galana-Sabaki River drainage system. Naga, the ICLARM Quarterly 21 (1): 44-53.
- Peterson B.K., Weber J.N., Kay E.H., Fisher H.S. & Hoekstra H.E. 2012. Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PloS ONE 7: e37135. https://doi.org/10.1371/journal.pone.0037135
- Pfeffer G.J. 1893. Ostafrikanische Fische gesammelt von Herrn Dr. F. Stuhlmann im Jahre 1888 und 1889. Jahrbuch der Hamburgischen Wissenschaftlichen Anstalten 10 (2): 131-177.
- Poll M. 1986. Classification des Cichlidae du lac Tanganika. Tribus, genres et especes. Memoires de l'Academie royale de Belgique, Classe des Sciences 45: 1-163.
- Poll M. & Gosse J.-P. 1995. Genera des poissons d'eau douce de l'Afrique. Memoire de la Classe des Sciences. Academie royale de Belgique 9: 1-324.
- R Core Team. 2019. R:A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available from https://www.R-project.org/ [accessed 22 Apr. 2022].
- Regan C.T. 1922a. The cichlid fishes of Lake Nyassa. Proceedings of the Zoological Society of London 1921: 675-727. https://doi.org/10.1111/j.1096-3642.1921.tb03287.x
- Regan C.T. 1922b. The cichlid fishes of Lake Victoria. Proceedings of the Zoological Society of London 1922: 157-191. https://doi.org/10.1111/j.1096-3642.1922.tb03304.x
- Rohr P.C., Ngana J. & Killingtveit A. 2002. Investigations of Chemka Spring, Kilimanjaro Region, Tanzania. In: Ngana J.O. (ed.) Water Resources Management: the Case of the Pangani River Basin: Issues and Approaches: 265-272. Dar es Salaam University Press, Dar es Salaam.
- Ronco F., Matschiner M., Bohne A., Boila A., Buscher H.H., El Taher A., Indermaur A., Malinsky M., Ricci V., Kahmen A. & Jentoft S. 2020. Drivers and dynamics of a massive adaptive radiation in cichlid fishes. Nature 589: 76-81. https://doi.org/10.1038/s41586-020-2930-4
- Rueden C.T., Schindelin J., Hiner M.C., DeZonia B.E., Walter A.E., Arena E.T. & Eliceiri K.W. 2017. ImageJ2: ImageJ for the next generation of scientific image data. BMC Bioinformatics 18: 529. https://doi.org/10.1186/s12859-017-1934-z
- Salzburger W., Meyer A., Baric S., Verheyen E. & Sturmbauer C. 2002. Phylogeny of the Lake Tanganyika cichlid species flock and its relationship to the Central and East African haplochromine cichlid fish faunas. Systematic Biology 51: 113-135. https://doi.org/10.1080/106351502753475907
- Schedel F.D.B. 2019. Un safari different! Impressions de la faune aquatique en Tanzanie du Nord. Revue francaise cichlidophile 386: 19-31
- Schedel F.D.B., Musilova Z. & Schliewen U.K. 2019. East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation. BMC Evolutionary Biology 19: 94. https://doi.org/10.1186/s12862-019-1417-0
- Schwarzer J., Swartz E.R., Vreven E., Snoeks J., Cotterill F.P.D., Misof B. & Schliewen U.K. 2012. Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution. Proceedings of the Royal Society B: Biological Sciences 279: 4389- 4398. https://doi.org/10.1098/rspb.2012.1667
- Seegers L. 2008. The fishes collected by GA Fischer in East Africa in 1883 and 1885/86. Zoosystematics and Evolution 84: 149-195. https://doi.org/10.1002/zoos.200800003
- Seegers L., De Vos L. & Okeyo D.O. 2003. Annotated checklist of the freshwater fishes of Kenya (excluding the lacustrine haplochromines from Lake Victoria). Journal of East African Natural History 92: 11-47.
- Shaw P.W., Turner G.F., Rizman Idid M., Robinson R.L. & Carvalho G.R. 2000. Genetic population structure indicates sympatric speciation of Lake Malawi pelagic cichlids.Proceedings of the Royal Society of London. Series B: Biological Sciences 267: 2273-2280. https://doi.org/10.1098/rspb.2000.1279
- Snoeks J. 2004. The Cichlid Diversity of Lake Malawi/Nyasa/Niassa: Identification, Distribution and Taxonomy. Cichlid Press, El Paso, TX.
- Stiassny M.L.J., Brummett R.E., Harrison I.J., Monsembula R. & Mamonekene V. 2011. The status and distribution of freshwater fishes in central Africa. In: Brooks E.G.E., Allen D.J. & Darwall W.R.T. (eds) The Status and Distribution of Freshwater Biodiversity in Central Africa: 27-46. IUCN, Cambridge, UK and Gland, Switzerland.
- Takahashi T. 2003. Systematics of Tanganyikan cichlid fishes (Teleostei: Perciformes). Ichthyological Research 50: 367-382. https://doi.org/10.1007/s10228-003-0181-7
- Trewavas E. 1946. The types of African cichlid fishes described by Borodin in 1931 and 1936, and of two species described by Boulenger in 1901. Proceedings of the Zoological Society of London 116: 240-246. https://doi.org/10.1111/j.1096-3642.1946.tb00121.x
- Turner G.F., Ngatunga B.P. & Genner M.J. 2021. Astatotilapia species (Teleostei, Cichlidae) from Malawi, Mozambique and Tanzania, excluding the basin of Lake Victoria. EcoEvoRxiv. https://doi.org/10.32942/osf.io/eu6rx
- Van Heusden H. 2015. Ctenochromis pectoralis: a most mysterious cichlid. Cichlid News 24: 24-29.
- Van Oijen M.J.P., Snoeks J., Skelton P.H., Marchal C. & Teugels G.G. 1991. Haplochromis. In: Daget J., Gosse J.P., Teugels G.G. & Thys Van Den Audenaerde D.F.E. (eds) Check List of the Freshwater Fishes of Africa = Catalogue des poissons d'eau douce d'Afrique. CLOFFA 4: 100-184. Musee royal de l'Afrique centrale, Tervuren.
- Viertler A., Salzburger W. & Ronco F. 2021. Comparative scale morphology in the adaptive radiation of cichlid fishes (Perciformes: Cichlidae) from Lake Tanganyika. Biological Journal of the Linnean Society 134: 541-556. https://doi.org/10.1093/biolinnean/blab099
- Voss J. 1977. Les livrees ou patrons de coloration chez les poissons Cichlides africains. Revue francaise d'Aquariologie 4: 34-80.
- Wagner C.E., McIntyre P.B., Buels K.S., Gilbert D.M. & Michel E. 2009. Diet predicts intestine length in Lake Tanganyika's cichlid fishes. Functional Ecology 23: 1122-1131. https://doi.org/10.1111/j.1365-2435.2009.01589.x
- Wagner C.E., Harmon L.J. & Seehausen O. 2012. Ecological opportunity and sexual selection together predict adaptive radiation. Nature 487: 366-369. https://doi.org/10.1038/nature11144
- Wamuini Lunkayilakio S. & Vreven E.J. 2010. 'Haplochromis ' snoeksi, a new species from the Inkisi River basin, Lower Congo (Perciformes: Cichlidae). Ichthyological Explorations of Freshwaters 21: 279-287.