Published August 24, 2021
| Version v1
Journal article
Restricted
Molecular phylogeny of pimoid spiders and the limits of Linyphiidae, with a reassessment of male palpal homologies (Araneae, Pimoidae)
- 1. Department of Biological Sciences, The George Washington University, Washington, D.C. 20052, USA.
- 2. Department of Biological Sciences, The George Washington University, Washington, D.C. 20052, USA. & sskspider@gwmail.gwu.edu; https://orcid.org/0000-0002-7400-4704
- 3. Department of Biological Sciences, The George Washington University, Washington, D.C. 20052, USA. & tmoreira@gmail.com; https://orcid.org/0000-0002-8536-641X
- 4. Department of Natural History, University Museum of Bergen, University of Bergen, P.O. Box 7800, 5020 Bergen, Norway. & dimitard.gwu@gmail.com; https://orcid.org/0000-0001-5830-5702
Description
Hormiga, Gustavo, Kulkarni, Siddharth, Moreira, Thiago Da Silva, Dimitrov, Dimitar (2021): Molecular phylogeny of pimoid spiders and the limits of Linyphiidae, with a reassessment of male palpal homologies (Araneae, Pimoidae). Zootaxa 5026 (1): 71-101, DOI: 10.11646/zootaxa.5026.1.3
Files
Linked records
Additional details
References
- Agarwal, I., Bauer, A.M., Jackman, T.R. & Karanth, K.P. (2014) Insights into Himalayan biogeography from geckos: a molecular phylogeny of Cyrtodactylus (Squamata: Gekkonidae). Molecular Phylogenetics and Evolution, 80, 145-155. https://doi.org/10.1016/j.ympev.2014.07.018
- Ali, J.R. & Aitchison, J.C. (2008) Gondwana to Asia: Plate tectonics, paleogeography and the biological connectivity of the Indian sub-continent from the Middle Jurassic through latest Eocene (166-35 Ma). Earth Science Review, 88, 145-166. https://doi.org/10.1016/j.earscirev.2008.01.007
- Arnedo, M., Scharff, N. & Hormiga, G. (2009) Higher-level phylogenetics of linyphiid spiders (Araneae, Linyphiidae) based on morphological and molecular evidence. Cladistics, 25 (3), 231-262. https://doi.org/10.1111/j.1096-0031.2009.00249.x
- Blackwall, J. (1859) Descriptions of newly discovered spiders captured by James Yate Johnson Esq., in the island of Madeira. Annals and Magazine of Natural History, Series 3, 4 (22), 255-267. https://doi.org/10.1080/00222935908697122
- Blauvelt, H.H. (1936) The Comparative Morphology of the Secondary Sexual Organs of Linyphia and Some Related Genera, Including a Revision of the Group. Festschrift fur Professor Dr. Strand, 2, 81-171.
- Capella-Gutierrez, S, Silla-Martinez, J.M. & Gabaldon, T. (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics, 25 (15), 1972-1973. https://doi.org/10.1093/bioinformatics/btp348
- Clift, P.D., Hodges, K.V., Heslop, D., Hannigan, R., van Long, H. & Calves, G. ( 2008) Correlation of Himalayan exhumation rates and Asian monsoon intensity. Nature Geoscience, 1, 875-880. https://doi.org/10.1038/ngeo351
- Coddington, J.A. (1990) Ontogeny and Homology in the Male Palpus of Orb-Weaving Spiders and Their Relatives, with Comments on Phylogeny (Araneoclada: Araneoidea, Deinopoidea). Smithsonian Contributions to Zoology, 496, 1-52. https://doi.org/10.5479/si.00810282.496
- Dimitrov, D., Benavides, L.R., Arnedo, M.A., Giribet, G., Griswold, C.E., Scharff, N. & Hormiga, G. (2017) Rounding up the usual suspects: a standard target- gene approach for resolving the interfamilial phylogenetic relationships of ecribellate orb- weaving spiders with a new family- rank classification (Araneae, Araneoidea). Cladistics, 33 (3), 221-250. https://doi.org/10.1111/cla.12165
- Dimitrov, D., Lopardo, L., Giribet, G., Arnedo, M.A., Alvarez-Padilla, F. & Hormiga, G. (2012) Tangled in a sparse spider web: single origin of orb weavers and their spinning work unravelled by denser taxonomic sampling. Proceedings of the Royal Society B, 279 (1732), 1341-1350. https://doi.org/10.1098/rspb.2011.2011
- Farris, J.S. (1976) Phylogenetic classification of fossils with recent species. Systematic Zoology 25, 271-282. https://doi.org/10.2307/2412495
- Fernandez, R., Kallal, R.J., Dimitrov, D., Ballesteros, J.A., Arnedo, M.A., Giribet, G. & Hormiga, G. (2018) Phylogenomics, Diversification Dynamics, and Comparative Transcriptomics across the Spider Tree of Life. Current Biology, 28 (9), 1489- 1497. https://doi.org/10.1016/j.cub.2018.03.064
- Forster, R.R., Platnick, N.I. & Coddington, J. (1990) A proposal and review of the spider family Synotaxidae (Araneae, Araneoidea), with notes on theridiid interrelationships. Bulletin of the American Museum of Natural History, 193, 1-116.
- Frick, H. & Scharff, N. (2013) Phantoms of Gondwana?-phylogeny of the spider subfamily Mynogleninae (Araneae: Linyphiidae). Cladistics, 30 (1), 67-106. https://doi.org/10.1111/cla.12025
- Gavish-Regev, E., Hormiga, G. & Scharff, N. (2013) Pedipalp sclerite homologies and phylogenetic placement of the spider genus Stemonyphantes (Linyphiidae, Araneae) and its implications for linyphiid phylogeny. Invertebrate Systematics, 27 (1), 38-52. https://doi.org/10.1071/IS12014
- Griswold, C.E. (2001) A monograph of the living world genera and Afrotropical species of cyatholipid spiders (Araneae, Orbiculariae, Araneoidea, Cyatholipidae). Memoirs of the California Academy of Sciences, 26, 1-251.
- Griswold, C.E., Coddington, J.A., Hormiga, G. & Scharff, N. (1998) Phylogeny of the orb-web building spiders (Araneae, Orbiculariae: Deinopoidea, Araneoidea). Zoological Journal of The Linnean Society, 123, 1-99. https://doi.org/10.1111/j.1096-3642.1998.tb01290.x
- Guindon, S., Dufayard, J., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology, 59 (3), 307-321. https://doi.org/10.1093/sysbio/syq010
- Hoang, D.T., Chernomor, O., von Haeseler, A. & Minh, B.-Q. & Vinh, L.S. (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution, 35, 518-522. https://doi.org/10.1093/molbev/msx281
- Holt, B.G., Lessard, J.-P., Borregaard, M. K., Fritz, S.A., Araujo, M.B., Dimitrov, D., Fabre, P.-H., Graham, C.H., Graves, G.R., Jonsson, K.A., Nogues-Bravo, D., Wang, Z., Whittaker, R.J., Fjeldsa, J. & Rahbek C. (2013) An Update of Wallace's Zoogeographic Regions of the World. Science, 339, 74-78. https://doi.org/10.1126/science.1228282
- Hormiga, G. (1993) Implications of the phylogeny of Pimoidae for the systematics of linyphiid spiders (Araneae, Araneoidea, Linyphiidae). Memoirs of the Queensland Museum, 33 (2), 533-542.
- Hormiga, G. (1994a) A revision and cladistic analysis of the spider family Pimoidae (Araneae: Araneoidea). Smithsonian Contributions to Zoology, 549, 1-105. https://doi.org/10.5479/si.00810282.549
- Hormiga, G. (1994b) Cladistics and the comparative morphology of linyphiid spiders and their relatives (Araneae, Araneoidea, Linyphiidae). Zoological Journal of the Linnean Society, 111, 1-71. https://doi.org/10.1111/j.1096-3642.1994.tb01491.x
- Hormiga, G. (2003) Weintrauboa, a new genus of pimoid spiders from Japan and adjacent islands, with comments on the monophyly and diagnosis of the family Pimoidae and the genus Pimoa (Araneoidea, Araneae). Zoological Journal of the Linnean Society, 139, 261-281. https://doi.org/10.1046/j.1096-3642.2003.00072.x
- Hormiga, G. (2008) On the spider genus Weintrauboa (Araneae, Pimoidae), with a description of a new species from China and comments on its phylogenetic relationships. Zootaxa, 1814 (1), 1-20. https://doi.org/10.11646/zootaxa.1814.1.1
- Hormiga, G. & Scharff, N. (2005) Monophyly and phylogenetic placement of the spider genus Labulla Simon, 1884 (Araneae, Linyphiidae) and description of the new genus Pecado. Zoological Journal of the Linnean Society, 143, 359-404. https://doi.org/10.1111/j.1096-3642.2005.00147.x
- Hormiga, G. & Tu, L. (2008) On Putaoa, a new genus of the spider Family Pimoidae (Araneae) from China, with a cladistic test of its monophyly and phylogenetic placement. Zootaxa, 1792 (1), 1-21. https://doi.org/10.11646/zootaxa.1792.1.1
- Hormiga, G., Buckle, D.J. & Scharff, N. (2005) Nanoa, an enigmatic new genus of pimoid spiders from western North America (Pimoidae, Araneae). Zoological Journal of the Linnean Society, 145 (2), 249-262. https://doi.org/10.1111/j.1096-3642.2005.00192.x
- Kallal, R.J., Kulkarni, S.K., Dimitrov, Benavides, L.R., Arnedo, M.A., Giribet, G. & Hormiga, G. (2021) Converging on the orb: denser taxon sampling elucidates spider phylogeny and new analytical methods support repeated evolution of the orb web. Cladistics, 37 (3), 298-316. https://doi.org/10.1111/cla.12439
- Kalyaanamoorthy, S., Minh, B.-Q., Wong, T.K.F., von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14, 587-589. https://doi.org/10.1038/nmeth.4285
- Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30, 772-780. https://doi.org/10.1093/molbev/mst010
- Klaus, S., Schubart, C.D., Streit, B. & Pfenninger, M. (2010) When Indian crabs were not yet Asian-biogeographic evidence for Eocene proximity of India and Southeast Asia. BMC Evolutionary Biology, 10, 287. https://doi.org/10.1186/1471-2148-10-287
- Kulkarni, S., Wood, H., Lloyd, M. & Hormiga, G. (2020) Spider-specific probe set for ultraconserved elements offers new perspectives on the evolutionary history of spiders (Arachnida, Araneae). Molecular Ecology Resources, 20, 185-203. https://doi.org/10.1111/1755-0998.13099
- Kulkarni, S.K., Kallal, R.J., Wood, H., Dimitrov, D., Giribet, G. & Hormiga, G. (2021) Interrogating genomic-scale data to resolve recalcitrant nodes in the Spider Tree of Life. Molecular Biology and Evolution, 38 (3), 891-903. https://doi.org/10.1093/molbev/msaa251
- Lavin, M. & Luckow, M. (1993) Origins and relationships of tropical North America in the context of the boreotropics hypothesis. American Journal of Botany, 80, 1-14. https://doi.org/10.1002/j.1537-2197.1993.tb13761.x
- Maddison, W.P. & Maddison, D.R. (2018) Mesquite: a modular system for evolutionary analysis. Version 3.61. Available from http://mesquiteproject.org (accessed 8 June 2021)
- Magalhaes, I.L.F., Azevedo, G.H.F., Michalik, P. & Ramirez, M.J. (2020) The fossil record of spiders revisited: implications for calibrating trees and evidence for a major faunal turnover since the Mesozoic. Biological Reviews, 95, 184-217. https://doi.org/10.1111/brv.12559
- Mammola, S., Hormiga, G., Arnedo, M.A. & Isaia, M. (2016) Unexpected diversity in the relictual European spiders of the genus Pimoa (Araneae: Pimoidae). Invertebrate Systematics, 30 (6), 566-587. https://doi.org/10.1071/IS16017
- Mammola, S., Hormiga, G. & Isaia, M. (2017) Species conservation profile of the stenoendemic cave spider Pimoa delphinica (Araneae, Pimoidae) from the Varaita valley (NW-Italy). Biodiversity data journal, 5, e11509. https://doi.org/10.3897/BDJ.5.e11509
- Matzke, N. (2013) BioGeoBEARS: BioGeography with Bayesian (and likelihood) evolutionary analysis in R scripts. R package. Version 0.2.1. published 27 July 2013. Available from: http://phylo.wikidot.com/biogeobears (accessed 26 July 2021)
- Merrett, P. (1963) The palpus of male spiders of the family Linyphiidae. Proceedings of the Zoological Society of London, 140 (3), 347-467. https://doi.org/10.1111/j.1469-7998.1963.tb01867.x
- Metcalfe, I. (2013) Gondwana dispersion and Asian accretion: tectonic and palaeogeographic evolution of eastern Tethys. Journal of Asian Earth Sciences, 66, 1-33. https://doi.org/10.1016/j.jseaes.2012.12.020
- Michalik, P. & Hormiga, G. (2010) Ultrastructure of the spermatozoa in the spider genus Pimoa-new evidencefor the monophyly of Pimoidae plus Linyphiidae (Arachnida: Araneae). American Museum Novitates, 3682, 1-17. https://doi.org/10.1206/680.1
- Miller, J.A. & Hormiga, G. (2004) Clade stability and the addition of data-a case study from erigonine spiders (Araneae: Linyphiidae, Erigoninae). Cladistics, 20, 385-442. https://doi.org/10.1111/j.1096-0031.2004.00033.x
- Millidge, A.F. (1977) The conformation of the male palpal organs of Linyphiid spiders and its application to the taxonomic and phylogenetic analysis of the family (Araneae: Linyphiidae). Bulletin of the British Arachnological Society, 4, 1-60.
- Nguyen, L.-T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution, 32, 268-274. https://doi.org/10.1093/molbev/msu300
- Penney, D. & Selden, P.A. (2002) The oldest linyphiid spider, in Lower Cretaceous Lebanese amber (Araneae, Linyphiidae, Linyphiinae). Journal of Arachnology, 30, 487-493. https://doi.org/10.1636/0161-8202(2002)030[0487:TOLSIL]2.0.CO;2
- Ranwez, V., Harispe, S., Delsuc, F. & Douzery, E.J.P. (2011) MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons. PLoS ONE, 6, e22594. https://doi.org/10.1371/journal.pone.0022594
- Ree, R.H. & Sanmartin, I. (2018) Conceptual and statistical problems with the DEC+J model of founder-event speciation and its comparison with DEC via model selection. Journal of Biogeography, 45 (4), 741-749. https://doi.org/10.1111/jbi.13173
- Ree, R.H. & Smith, S.A. (2008) Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology, 57, 4-14. https://doi.org/10.1080/10635150701883881
- Saaristo, M.I. (1977) Secondary genital organs in the taxonomy of Lepthyphantinae (Araneae, Linyphiidae). Reports from the Department of Zoology, University of Turku, 5, 1-16.
- Smith, S.A. & O'Meara, B.C. (2012) treePL: divergence time estimation using penalized likelihood for large phylogenies. Bioinformatics, 28, 2689-2690. https://doi.org/10.1093/bioinformatics/bts492
- Thaler, K. (1976) Two remarkable relict arachnids from northern Italy: Sabacon simoni Dresco (Opiliones: Ischyropsalididae), Louisfagea rupicola (Simon) (Araneae: Tetragnathidae). Bulletin of the British Arachnological Society, 3 (8), 205-210.
- Tietze, D.T., Packert, M., Martens, J., Lehmann, H. & Sun, Y.-H. (2013) Complete phylogeny and historical biogeography of true rosefinches (Aves: Carpodacus). Zoological Journal of the Linnaean Society, 169, 215-234. https://doi.org/10.1111/zoj.12057
- Tiffney, B. (1985a) The Eocene North Atlantic Land Bridge: its importance in Tertiary and modern phytogeography of the Northern Hemisphere. Journal of the Arnold Arboretum, 66, 243-273. https://doi.org/10.5962/bhl.part.13183
- Tiffney, B.H. (1985b) Perspectives on the origin of the floristic similarity between Eastern Asia and Eastern North America. Journal of the Arnold Arboretum, 66, 73-94. https://doi.org/10.5962/bhl.part.13179
- To, T., Jung, M., Lycett, S. & Gascuel, O. (2016) Fast dating using least-squares criteria and algorithms. Systematic Biology, 65, 82-97. https://doi.org/10.1093/sysbio/syv068
- Van Helsdingen, P.J. (1968) Comparative notes on the species of the Holartic genus Stemonyphantes Menge (Araneida, Linyphiidae). Zoologische Mededelingen, 43, 117-139.
- Wang, F., Ballesteros, J.A., Hormiga, G., Chesters, D., Zhan, Y., Sun, N., Zhu, C., Chen, W. & Tu, L. (2015) Resolving the phylogeny of a speciose spider group, the family Linyphiidae (Araneae). Molecular phylogenetics and evolution, 91, 135- 149. https://doi.org/10.1016/j.ympev.2015.05.005
- Wheeler, W.C., Coddington, J.A., Crowley, L.M., Dimitrov, D., Goloboff, P.A., Griswold, C.E., Hormiga, G., Prendini, L., Ramirez, M.J., Sierwald, P., Almeida- Silva, L., Alvarez- Padilla, F., Arnedo, M.A., Benavides Silva, L.R., Benjamin, S.P., Bond, J.E., Grismado, C.J., Hasan, E., Hedin, M., Izquierdo, M.A., Labarque, F.M., Ledford, J., Lopardo, L., Maddison, W.P., Miller, J.A., Piacentini, L.N., Platnick, N.I., Polotow, D., Silva- Davila, D., Scharff, N., Szuts, T., Ubick, D., Vink, C.J., Wood, H.M. & Zhang, J. (2017) The spider tree of life: phylogeny of Araneae based on target-gene analyses from an extensive taxon sampling. Cladistics, 33 (6), 574-616. https://doi.org/10.1111/cla.12182
- WSC (2021). World Spider Catalog version 22.0. Natural History Museum Bern. Available at http://wsc.nmbe.ch (accessed 6 July 2021) https://doi.org/10.24436/2.
- Wunderlich, J. (1978) Die Gattungen Stemonyphantes Menge 1866 und Narcissius Jermolajew 1930, mit zwei Neubeschreibungen (Arachnida: Araneae: Linyphiidae). Senckenbergiana Biologica, 59, 125-132.
- Wunderlich, J. (1986) Spinnenfauna gestern und heute: Fossile Spinnen in Bernstein und ihre heute lebenden Verwandten. Quelle & Meyer, Wiesbaden, 283 pp.
- Wunderlich, J. (2004) Descriptions of the first fossil spiders (Araneae) of the family Pimoidae in Baltic amber. Beitrage zur Araneologie, 3, 1279- 1297.
- Yu, Y., Blair, C. & He, X.J. (2020) RASP 4: ancestral state reconstruction Tool for multiple genes and characters. Molecular Biology Evolution, 37, 604-606 https://doi.org/10.1093/molbev/msz257
- Zhang, X.Q., Lan, T.Q., Nie, L. & Li, S.Q. (2020) Eight new species of the spider genus Pimoa (Araneae, Pimoidae) from Tibet, China. ZooKeys, 940, 79-104. https://doi.org/10.3897/zookeys.940.49793
- Zhao, Z., Shao, L., Li, F., Zhang, X. & Li, S. (2020) Tectonic evolution of the Tethyan region created the Eurasian extratropical biodiversity hotspots: tracing Pireneitega spiders' diversification history. Ecography, 43 (9), 1400-1411. https://doi.org/10.1111/ecog.05044