Published December 31, 2014
| Version v1
Journal article
Restricted
Geographic variation and phylogenetic relationships of Myiopagis olallai (Aves: Passeriformes; Tyrannidae), with the description of two new taxa from the Northern Andes
Description
Cuervo, Andrés M., Stiles, F. Gary, Lentino, Miguel, Brumfield, Robb T., Derryberry, Elizabeth P. (2014): Geographic variation and phylogenetic relationships of Myiopagis olallai (Aves: Passeriformes; Tyrannidae), with the description of two new taxa from the Northern Andes. Zootaxa 3873 (1): 1-24, DOI: 10.11646/zootaxa.3873.1.1
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Linked records
Additional details
Identifiers
- URL
- https://www.checklistbank.org/dataset/36779
- LSID
- urn:lsid:zoobank.org:pub:651E5898-502F-4BD7-AFD0-1EACC556A4B5
- LSID
- urn:lsid:plazi.org:pub:CE1FFFA6FF95FFF55E3DFFFDFF9EC64B
- URL
- http://publication.plazi.org/id/CE1FFFA6FF95FFF55E3DFFFDFF9EC64B
References
- Alvarez-Alonso, J. & Whitney, B.M. (2001) A new Zimmerius tyrannulet (Aves: Tyrannidae) from white sand forests of northern Amazonian Peru. Wilson Bulletin, 113, 1-9.
- http://dx.doi.org/10.1676/0043-5643(2001)113[0001:ANZTAT]2.0.CO;2
- Arctander, P. (1995) Comparison of a mitochondrial gene and a corresponding nuclear pseudogene. Proceedings of the Royal Society of London B, 262, 13-19.
- http://dx.doi.org/10.1098/rspb.1995.0170
- Badyaev, A.V. & Hill, G.E. (2003) Avian sexual dichromatism in relation to phylogeny and ecology. Annual Review of Ecology, Evolution, and Systematics, 34, 27-49.
- http://dx.doi.org/10.1146/annurev.ecolsys.34.011802.132441
- Birdsley, J.S. (2002) Phylogeny of the tyrant flycatchers (Tyrannidae) based on morphology and behavior. The Auk, 119, 715-734.
- http://dx.doi.org/10.1642/0004-8038(2002)119[0715:POTTFT]2.0.CO;2
- Brumfield, R.T., Tello, J.G., Cheviron, Z.A., Carling, M.D., Crochet, N. & Rosenberg, K.V. (2007) Phylogenetic conservatism and antiquity of a tropical specialization: Army-ant-following in the typical antbirds (Thamnophilidae). Molecular Phylogenetics and Evolution, 45, 1-13.
- http://dx.doi.org/10.1016/j.ympev.2007.07.019
- Caranton-Ayala, D. & Certuche-Cubillos, K. (2010) A new species of antpitta (Grallariidae: Grallaria) from the northern sector of the Western Andes of Colombia. Ornitologia Colombiana, 9, 56-70.
- Carneiro, L.S., Gonzaga, L.P., Rego, P.S., Sampaio, I., Schneider, H. & Aleixo, A. (2012) Systematic revision of the Spotted Antpitta (Hylopezus macularius: Grallariidae), with description of a cryptic new species from Brazilian Amazonia. The Auk, 129, 338-351.
- http://dx.doi.org/10.1525/auk.2012.11157
- Chakrabarty, P. (2010) Genetypes: a concept to help integrate molecular phylogenetics and taxonomy. Zootaxa, 2632, 67-68.
- Chaves, J.C., Cuervo, A.M., Miller, M.J. & Cadena, C.D. (2010) Revising species limits in a group of Myrmeciza antbirds reveals a cryptic species within M. laemosticta (Thamnophilidae). The Condor, 112, 718-730. http://dx.doi.org/10.1525/cond.2010.100098
- Coopmans, P. & Krabbe, N. (2000) A new species of flycatcher (Tyrannidae: Myiopagis) from eastern Ecuador and eastern Peru. Wilson Bulletin, 112, 305-312.
- http://dx.doi.org/10.1676/0043-5643(2000)112[0305:ansoft]2.0.co;2
- Cuervo, A.M., Cadena, C.D., Krabbe, N. & Renjifo, L.M. (2005) Scytalopus stilesi, a new species of tapaculo (Rhinocryptidae) from the Cordillera Central of Colombia. The Auk, 122, 445-463.
- http://dx.doi.org/10.1642/0004-8038(2005)122[0445:ssanso]2.0.co;2
- Cuervo, A.M., Pulgarin, P.C. & Calderon, D. (2008a) New distributional bird data from the Cordillera Central of the Colombian Andes, with implications for the biogeography of northwestern South America. The Condor, 110, 526-537. http://dx.doi.org/10.1525/cond.2008.8555
- Cuervo, A.M., Pulgarin, P.C., Calderon-F, D., Ochoa-Quintero, J.M., Delgado-V., C.A., Palacio, J.A., Botero, J.M. & Munera, W.A. (2008b) Avifauna of the northern Cordillera Central of the Andes, Colombia. Ornitologia Neotropical, 19, 495-515.
- Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T. & Wilson, A. (2011) Geneious. Geneious v5.4. (2011) Available from: http://www.geneious.com/ (accessed 24 September 2014)
- Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797.
- http://dx.doi.org/10.1093/nar/gkh340
- Fitzpatrick, J.W. (2004) Family Tyrannidae (Tyrant-Flycatchers). In: del Hoyo, J., Elliot, A. & Christie, D.A. (Eds.) Handbook of the Birds of the World. Vol. 9. Lynx Edicions, Barcelona.
- Gines, H., Aveledo-Hostos, R., Pons, A.R., Yepez, G. & Munoz-Tebar, R. (1953) Lista y comentario de las aves colectadas en la region. In: Sociedad de Ciencias Naturales La Salle (Ed.), La region de Perija y sus habitantes. Editorial Sucre, Caracas, Venezuela, pp. 225-277.
- Hackett, S.J. (1996) Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Molecular Phylogenetics and Evolution, 5, 368-382.
- http://dx.doi.org/10.1006/mpev.1996.0032
- Hellmayr, C.E. (1904) Mr. C. E. Hellmayr exhibited the types of five South American birds, which he described as follows: Serpophaga parambae, n. sp. Bulletin of the British Ornithologists & apos Club, 14, 54-55.
- Hellmayr, C.E. (1911) A contribution to the ornithology of western Colombia. Proceedings of the Zoological Society of London, 81, 1084-1213.
- Hilty, S.L. (2003) Birds of Venezuela. Princeton University Press, New Jersey, NJ, 183 pp.
- Hosner, P.A. & Moyle, R.G. (2012) A molecular phylogeny of black-tyrants (Tyrannidae: Knipolegus) reveals strong geographic patterns and homoplasy in plumage and display behavior. The Auk, 129, 156-167. http://dx.doi.org/10.1525/auk.2012.11101
- Isler, M.L., Cuervo, A.M., Bravo, G.A. & Brumfield, R.T. (2012) An integrative approach to species-level systematics reveals the depth of diversification in an Andean thamnophilid, the Long-tailed Antbird. The Condor, 114, 571-583. http://dx.doi.org/10.1525/cond.2012.120012
- Isler, M.L., Isler, P.R. & Whitney, B.M. (1998) Use of vocalizations to establish species limits in antbirds (Passeriformes: Thamnophilidae). The Auk, 115, 577-590.
- http://dx.doi.org/10.2307/4089407
- Johnson, K.P. & Sorenson, M.D. (1998) Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (Tribe Anatini). Molecular Phylogenetics and Evolution, 10, 82-94.
- http://dx.doi.org/10.1006/mpev.1997.0481
- Kimball, R.T., Braun, E.L., Barker, F.K., Bowie, R.C.K., Braun, M.J., Chojnowski, J.L., Hackett, S.J., Han, K.-L., Harshman, J., Heimer-Torres, V., Holznagel, W., Huddleston, C.J., Marks, B.D., Miglia, K.J., Moore, W.S., Reddy, S., Sheldon, F.H., Smith, J.V., Witt, C.C. & Yuri, T. (2009) A well-tested set of primers to amplify regions spread across the avian genome. Molecular Phylogenetics and Evolution, 50, 654-660.
- http://dx.doi.org/10.1016/j.ympev.2008.11.018
- Krabbe, N. (2008) Birding Ecuador: A tribute to Paul Coopmans Cotinga, 29, 12-14.
- Krabbe, N. & Cadena, C.D. (2010) A taxonomic revision of the Paramo Tapaculo Scytalopus canus Chapman (Aves: Rhinocryptidae), with description of a new subspecies from Ecuador and Peru. Zootaxa, 2354, 56-66.
- Krabbe, N. & Nilsson, J. (2007) Birds of Ecuador 1.19. Bird Songs International, Westernieland, The Netherlands.
- Krabbe, N. & Schulenberg, T.S. (2003) Family Rhinocryptidae (Tapaculos). In: del Hoyo, J., Elliot, A. & Christie, D.A. (Eds.), Handbook of the Birds of the World, vol. 8, Broadbills to Tapaculos. Lynx Edicions, Barcelona, pp. 748-787.
- Kroodsma, D.E. (1984) Songs of the Alder Flycatcher (Empidonax alnorum) and Willow Flycatcher (Empidonax traillii) are innate. The Auk, 101, 13-24.
- http://www.jstor.org/stable/4086218
- Kroodsma, D.E. & Konishi, M. (1991) A suboscine bird (Eastern Phoebe, Sayornis phoebe) develops normal song without auditory feedback. Animal Behaviour, 42, 477-487.
- http://dx.doi.org/10.1016/S0003-3472(05)80047-8
- Lentino, M., Sharpe, C., Perez-Eman, J.L. & Carreno, Y. (2004) Aves registradas en la Serrania de Lajas, Serrania de Valledupar, Sierra de Perija, Estado Zulia, en Abril del 2004. Technical report. Coleccion Ornitologica Phelps, Caracas, Venezuela, 25 pp.
- Liu, L. (2008) BEST: Bayesian estimation of species trees under the coalescent model. Bioinformatics, 24, 2542-2543. http://dx.doi.org/10.1093/bioinformatics/btn484
- Lopez-O., J.P., Avendano, J.E., Gutierrez-Pinto, N. & Cuervo, A.M. (2014) The birds of Serrania de Perija: The northernmost avifauna of the Andes. Ornitologia Colombiana, 14. [in press]
- Lysinger, M., Moore, J.V., Krabbe, N., Coopmans, P., Lane, D.F., Navarrete, L., Nilsson, J. & Ridgely, R.S. (2005) The birds of eastern Ecuador: The foothills and lower subtropics. John V. Moore Nature Recordings, San Jose, CA, U.S.A. [CD]
- Mata, H., Fontana, C.S., Mauricio, G.N., Bornschein, M.R., de Vasconcelos, M.F. & Bonatto, S.L. (2009) Molecular phylogeny and biogeography of the eastern tapaculos (Aves: Rhinocryptidae: Scytalopus, Eleoscytalopus): Cryptic diversification in Brazilian Atlantic Forest. Molecular Phylogenetics and Evolution, 53, 450-462.
- http://dx.doi.org/10.1016/j.ympev.2009.07.017
- Mauricio, G.N., Belmonte-Lopes, R., Pacheco, J.F., Silveira, L.F., Whitney, B.M. & Bornschein, M.R. (2014) Taxonomy of "Mouse-colored Tapaculos" (II): An endangered new species from the montane Atlantic Forest of southern Bahia, Brazil (Passeriformes: Rhinocryptidae: Scytalopus). The Auk, 131, 643-659.
- http://dx.doi.org/10.1642/auk-14-16.1
- Mayr, E. (1942) Systematics and the origin of species. Columbia University Press, New York, NY, 120 pp.
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, LA, pp. 1-8. http://dx.doi.org/10.1109/gce.2010.5676129
- Nyari, A.S. (2007) Phylogeographic patterns, molecular and vocal differentiation, and species limits in Schiffornis turdina (Aves). Molecular Phylogenetics and Evolution, 44, 154-164.
- http://dx.doi.org/10.1016/j.ympev.2007.02.020
- Nylander, J.A.A. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
- Nylander, J.A.A., Wilgenbusch, J.C., Warren, D.L. & Swofford, D.L. (2008) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics, 24, 581-583. http://dx.doi.org/10.1093/bioinformatics/btm388
- Ohlson, J.I., Fjeldsa, J. & Ericson, P.G.P. (2009) A new genus for three species of tyrant flycatchers (Passeriformes: Tyrannidae), formerly placed in Myiophobus. Zootaxa, 2290, 36-40.
- Parker, T.A. (1991) On the use of tape recorders in avifaunal surveys. The Auk, 108, 443-444.
- Pelzeln, A.v. (1868) Zur Ornithologie Brasiliens, Resultate von Johann Natterer Reisen in den Jahren 1817 bis 1835. A. Pichler's Witwe & Sohn, Wien, 18 pp.
- http://dx.doi.org/10.5962/bhl.title.3654
- Phelps, W.H. (1943) Las Aves de Perija. Boletin de la Sociedad Venezolana de Ciencias Naturales, 8, 265-338.
- Pitman, N., Moskovits, D.K., Alverson, W.S. & Borman A., R. (2002) Ecuador: Serranias Cofan-Bermejo, Sinangoe. The Field Museum, Chicago, IL, USA., 226 pp.
- Rambaut, A. & Drummond, A.J. (2007) Tracer v1.4.
- Remsen, J.V. Jr. (2005) Pattern, process, and rigor meet classification. The Auk, 122, 403-413. http://dx.doi.org/10.1642/0004-8038(2005)122[0403:PPARMC]2.0.CO;2
- Remsen, J.V. Jr. (2010) Subspecies as a meaningful taxonomic rank in avian classification. Ornithological Monographs, 67, 62-78.
- http://dx.doi.org/10.1525/om.2010.67.1.62
- Restall, R., Rodner, C. & Lentino, M. (2007) Birds of Northern South America: An Identification Guide. Vol. 2. Plates and Maps. Yale University Press, New Haven, 656 pp.
- Rheindt, F.E., Christidis, L., Cabanne, G.S., Miyaki, C. & Norman, J.A. (2009) The timing of Neotropical speciation dynamics: A reconstruction of Myiopagis flycatcher diversification using phylogenetic and paleogeographic data. Molecular Phylogenetics and Evolution, 53, 961-971.
- http://dx.doi.org/10.1016/j.ympev.2009.09.001
- Rheindt, F.E., Cuervo, A.M. & Brumfield, R.T. (2013) Rampant polyphyly indicates cryptic diversity in a clade of Neotropical flycatchers (Aves: Tyrannidae). Biological Journal of the Linnean Society, 108, 889-900. http://dx.doi.org/10.1111/j.1095-8312.2012.02036.x
- Rheindt, F.E., Norman, J.A. & Christidis, L. (2008) Phylogenetic relationships of tyrant-flycatchers (Aves: Tyrannidae), with an emphasis on the elaeniine assemblage. Molecular Phylogenetics and Evolution, 46, 88-101. http://dx.doi.org/10.1016/j.ympev.2007.09.011
- Ridgway, R. (1907) The birds of North and Middle America. Part IV. Bulletin of the United States National Museum, No. 50, 1-973.
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
- http://dx.doi.org/10.1093/bioinformatics/btg180
- Salvin, O. & Godman, F.D. (1888) Biologia Centrali-Americana. Aves. Vol. 2. Privately printed, 598 pp.
- Saranathan, V., Hamilton, D., Powell, G.V.N., Kroodsma, D.E. & Prum, R.O. (2007) Genetic evidence supports song learning in the three-wattled bellbird Procnias tricarunculata (Cotingidae). Molecular Ecology, 16, 3689-3702. http://dx.doi.org/10.1111/j.1365-294x.2007.03415.x
- Schulenberg, T.-S. & Parker, T.-A. III. (1997) A new species of tyrant-flycatcher (Tyrannidae: Tolmomyias) from the western Amazon Basin. Ornithological Monographs, 48, pp. 722-731.
- Schulenberg, T.S. & Kirwan, G.M. (2012) Foothill Elaenia (Myiopagis olallai). Neotropical Birds Online. Available from: http://neotropical.birds.cornell.edu (accessed 1 May 2014)
- Smithe, F.B. (1975) Naturalist's Color Guide. Part I. & II. American Museum of Natural History, New York, NY, 237 pp.
- Smithe, F.B. (1981) Naturalist's Color Guide, Part III. American Museum of Natural History, New York, New York, 37 pp.
- Sorenson, M.D., Ast, J.C., Dimcheff, D.E., Yuri, T. & Mindell, D.P. (1999) Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Molecular Phylogenetics and Evolution, 12 (2), 105-114. http://dx.doi.org/10.1006/mpev.1998.0602
- Sorenson, M.D. & Quinn, T.W. (1998) Numts: A challenge for avian systematics and population biology. The Auk, 115, 214-221.
- http://dx.doi.org/10.2307/4089130
- Stamatakis, A. (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
- http://dx.doi.org/10.1093/bioinformatics/btl446
- Swofford, D.L. (2002) PAUP*. Phylogenetic Analysis Using Parsimony et al.(*and other methods) version 4.0b10. Sinauer Associates, Sunderland, MA
- Touchton, J.M., Seddon, N. & Tobias, J.A. (2014) Rearing experiments confirm song development without learning in a tracheophone suboscine bird. PLoS ONE, 9, e95746.
- http://dx.doi.org/10.1371/journal.pone.0095746
- Traylor, M.A., Jr. (1977) A classification of the Tyrant Flycatchers (Tyrannidae). Bulletin of the Museum of Comparative Zoology, 148, 129-184.
- Traylor, M.A., Jr. (1979) Checklist of the birds of the world. Vol. 8. Cambridge, MA, Museum of Comparative Zoology, 365 pp. http://dx.doi.org/10.5962/bhl.title.14581
- Wetmore, A. (1963) Additions to records of birds known from the Republic of Panama. Smithsonian Miscellaneous Collections, 145, 1-11.
- Whitney, B.M., Cohn-Haft, M., Bravo, G.A., Schunck, F. & Silveira, L.F. (2013) A new species of Herpsilochmus antwren from the Aripuana-Machado interfluvium in central Amazonian Brazil. In: del Hoyo, J., Elliot, A., Sargatal, J. & Christie, D.A. (Eds.), Handbook of the Birds of the World. Special Volume. New Species and Global Index. Lynx Edicions, Barcelona, Spain, pp. 277-281.
- Whitney, B.M., Ferreira de Vasconcelos, M., Silveira, L.F. & Pacheco, J.F. (2010) Scytalopus petrophilus (Rock Tapaculo): a new species from Minas Gerais, Brazil. Revista Brasileira de Ornitologia, 18, 73-88.
- Zimmer, J.T. (1941) Studies of Peruvian birds. No. 36. The genera Elaenia and Myiopagis. American Museum Novitates, 1108, 1-24.
- Zimmer, K.J. & Whittaker, A. (2000) Species limits in Pale-tipped Tyrannulets (Inezia: Tyrannidae). Wilson Bulletin, 112, 51-66.
- http://dx.doi.org/10.1676/0043-5643(2000)112[0051:sliptt]2.0.co;2
- Zimmer, K.J., Whittaker, A., Sardelli, C.H., Guilherme, E. & Aleixo, A. (2013) A new species of Hemitriccus tody-tyrant from the state of Acre, Brazil. In: del Hoyo, J., Elliot, A., Sargatal, J. & Christie, D.A. (Eds.), Handbook of the Birds of the World. Special Volume: New Species and Global Index. Lynx Edicions, Barcelona, Spain, pp. 292-296.