Published May 12, 2015
| Version v1.6.5
Software
Open
nat: nat 1.6.5
Creators
- 1. MRC Laboratory of Molecular Biology
- 2. EPSRC CDT in Sensor Technologies and Applications
Description
This release includes a host of small enhancements and bug fixes
- add xyzmatrix get/set methods for class mesh3d along with xform.shape3d. This should enable rgl::mesh3d objects (used in a number of other packages) to be transformed using CMTK registrations.
- add tail.neuronlist
- add as.data.frame.neuronlist for convenient generation of a data.frame from a neuronlist
- add help topics for generics subset and plot3d so that e.g. ?subset will give the option to see our documentation as well as base docs.
- subset.hxsurf drops unused vertices by default
- add sample surface object of mushroom body
- teach cmtk.statistics to handle imagetype == 'label' (#221)
- plot.neuronlist sets axes based on boundingbox of all plotted neurons, not just the first neuron (#223)
- plot.neuron(,AxisDirections) argument is re-implemented (#224)
- don't warn when read.neuronlistfh changes the directory location on disk (#157)
- remove superimposed plots in mirror example (hope this will fix build on macosx snowleopard)
- teach read.neurons to OmitFailures when reading in a neuronlistfh object.
- fix handling of default colours in plot.neuronlist and plot3d.neuronlist (#230)
- fix plot3d.neuronlist returns one element per neuron
- fix bug in xformpoints.cmtkreg when some points could not be transformed - now give NAs as expected (#227)
- fix bug when xform(na.action='drop') dropped dimensions when only 1 valid point resulted (#228)
- teach xyz.matrix<- to work for bare 3 column matrices (i.e. without colnames)
- fix bug in xformimage where input image was not being passed on when transforming with a matrix.
- read.hxsurf can accept RegionChoices='both' (see ?read.hxsurf)
- fix: unary -.neuronlist behaves
- docs: numerous minor doc/example improvements
- dev: improvements in test coverage (up to 84%) catching numerous small bugs in the process.
Files
nat-v1.6.5.zip
Files
(1.4 MB)
Name | Size | Download all |
---|---|---|
md5:e5166de7414c62ada82c44b8df325e42
|
1.4 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/jefferis/nat/tree/v1.6.5 (URL)