Planned intervention: On Wednesday April 3rd 05:30 UTC Zenodo will be unavailable for up to 2-10 minutes to perform a storage cluster upgrade.

There is a newer version of the record available.

Published May 12, 2015 | Version v1.6.5
Software Open

nat: nat 1.6.5

  • 1. MRC Laboratory of Molecular Biology
  • 2. EPSRC CDT in Sensor Technologies and Applications

Description

This release includes a host of small enhancements and bug fixes

  • add xyzmatrix get/set methods for class mesh3d along with xform.shape3d. This should enable rgl::mesh3d objects (used in a number of other packages) to be transformed using CMTK registrations.
  • add tail.neuronlist
  • add as.data.frame.neuronlist for convenient generation of a data.frame from a neuronlist
  • add help topics for generics subset and plot3d so that e.g. ?subset will give the option to see our documentation as well as base docs.
  • subset.hxsurf drops unused vertices by default
  • add sample surface object of mushroom body
  • teach cmtk.statistics to handle imagetype == 'label' (#221)
  • plot.neuronlist sets axes based on boundingbox of all plotted neurons, not just the first neuron (#223)
  • plot.neuron(,AxisDirections) argument is re-implemented (#224)
  • don't warn when read.neuronlistfh changes the directory location on disk (#157)
  • remove superimposed plots in mirror example (hope this will fix build on macosx snowleopard)
  • teach read.neurons to OmitFailures when reading in a neuronlistfh object.
  • fix handling of default colours in plot.neuronlist and plot3d.neuronlist (#230)
  • fix plot3d.neuronlist returns one element per neuron
  • fix bug in xformpoints.cmtkreg when some points could not be transformed - now give NAs as expected (#227)
  • fix bug when xform(na.action='drop') dropped dimensions when only 1 valid point resulted (#228)
  • teach xyz.matrix<- to work for bare 3 column matrices (i.e. without colnames)
  • fix bug in xformimage where input image was not being passed on when transforming with a matrix.
  • read.hxsurf can accept RegionChoices='both' (see ?read.hxsurf)
  • fix: unary -.neuronlist behaves
  • docs: numerous minor doc/example improvements
  • dev: improvements in test coverage (up to 84%) catching numerous small bugs in the process.

Files

nat-v1.6.5.zip

Files (1.4 MB)

Name Size Download all
md5:e5166de7414c62ada82c44b8df325e42
1.4 MB Preview Download

Additional details

Related works