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Published April 20, 2020 | Version v1
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Alternaria vicatiae sp. nov. (Ascomycota: Pleosporaceae) Isolated from Vicatia thibetica in China

Creators

  • 1. Department of Plant Protection, College of Agriculture, Yangtze University, Jingzhou 434025, China & Forewarning and Management of Agricultural and Forestry Pests, Hubei Engineering Technology Center, Yangtze University, Jingzhou 434025, China
  • 2. Gansu University of Chinese Medicine, Lanzhou 730000, China

Description

He, Lin, Liu, Hai Feng, Cui, Meng Jiao, Pei, Dong Fang, Du, Tao, Deng, Jian Xin (2020): Alternaria vicatiae sp. nov. (Ascomycota: Pleosporaceae) Isolated from Vicatia thibetica in China. Phytotaxa 439 (3): 255-264, DOI: 10.11646/phytotaxa.439.3.7, URL: http://dx.doi.org/10.11646/zootaxa.5360.3.8

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Cites
Publication: 10.1080/00275514.1999.12061106 (DOI)
Publication: 10.1080/00275514.1999.12061051 (DOI)
Publication: 10.1093/nar/20.9.2380 (DOI)
Publication: 10.1094/PDIS-07-17-1027-RE (DOI)
Publication: 10.5941/MYCO.2014.42.1.12 (DOI)
Publication: 10.5248/130.207 (DOI)
Publication: 10.11646/phytotaxa.405.6.1 (DOI)
Publication: 10.1093/sysbio/42.2.182 (DOI)
Publication: 10.1016/j.fgb.2004.10.009 (DOI)
Publication: 10.1007/s11557-011-0793-7 (DOI)
Publication: 10.1007/s11557-013-0910-x (DOI)
Publication: 10.3852/12-249 (DOI)
Publication: 10.1007/s11557-015-1144-x (DOI)
Publication: 10.1007/s11557-019-01504-3 (DOI)
Publication: 10.1093/oxfordjournals.molbev.a026092 (DOI)
Publication: 10.11646/phytotaxa.401.4.6 (DOI)
Publication: 10.1007/978-1-4939-6707-0_2 (DOI)
Publication: 10.1080/15572536.2004.11833024 (DOI)
Publication: 10.1017/S0953756200003002 (DOI)
Publication: 10.1093/bioinformatics/btg180 (DOI)
Publication: 10.1093/bioinformatics/btl446 (DOI)
Publication: 10.1016/j.ympev.2007.03.011 (DOI)
Publication: 10.1093/molbev/msr121 (DOI)
Publication: 10.1093/molbev/mst197 (DOI)
Publication: 10.11646/phytotaxa.397.2.4 (DOI)
Publication: 10.1016/B978-0-12-372180-8.50042-1 (DOI)
Publication: 10.3114/sim0015 (DOI)
Publication: 10.1016/j.simyco.2014.07.003 (DOI)
Publication: 10.1016/j.simyco.2015.07.001 (DOI)
Publication: 10.16333/j.1001-6880.2004.03.010 (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.13873331 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/4F3287FDA143FFDB8AD10780FD52BAFA (URL)
Figure: 10.5281/zenodo.13873325 (DOI)
Figure: 10.5281/zenodo.13873327 (DOI)
Is source of
Dataset: https://www.gbif.org/dataset/650b5ace-71db-48fa-80a7-03fb400d545f (URL)

References

  • Berbee, M.L., Pirseyedi, M. & Hubbard, S. (1999) Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia 91: 964-977. https://doi.org/10.1080/00275514.1999.12061106
  • Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556. https://doi.org/10.1080/00275514.1999.12061051
  • Cenis, J.L. (1992) Rapid extraction of fungal DNA for PCR amplification. Nucleic Acids Research 20: 2380. https://doi.org/10.1093/nar/20.9.2380
  • Dang, J.L., Gleason, M.L., Li, L.N., Wang, C., Niu, C.K., Zhang, R. & Sun, G.Y. (2018) Alternaria malicola sp. nov., a New Pathogen Causing Fruit Spot on Apple in China. Plant Disease 102: 1273-1282. https://doi.org/10.1094/PDIS-07-17-1027-RE
  • Deng, J.X., Cho, H.S., Paul, N.C., Lee, H.B. & Yu, S.H. (2014) A novel species belonging to Alternaria isolated from Peucedanum japonicum in Korea. Mycobiology 42: 12-16. https://doi.org/10.5941/MYCO.2014.42.1.12
  • Gannibal, P.B. (2015) Distribution of Alternaria species among sections. 1. Section Porri. Mycotaxon 130: 207-213 https://doi.org/10.5248/130.207
  • Ghafri, A.A., Maharachchikunbura, S.S., Hyde, K.D, Nadiya, A.A.S. & Abdullah, M.A.S. (2019) A new section and a new species of Alternaria encountered from Oman. Phytotaxa 405: 279-289. https://doi.org/10.11646/phytotaxa.405.6.1
  • Hillis, D.M. & Bull, J.J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192. https://doi.org/10.1093/sysbio/42.2.182
  • Hong, S.G., Cramer, R.A., Lawrence, C.B. & Pryor, B.M. (2005) Alt a 1 allergen homologs from A. and related taxa: analysis of phylogenetic content and secondary structure. Fungal Genetics and Biology 42: 119-129. https://doi.org/10.1016/j.fgb.2004.10.009
  • Lawrence, D.P., Park, M.S. & Pryor, B.M. (2012) Nimbya and embellisia revisited, with nov.comb. for Alternaria celosiae and A. perpunctulata. Mycological Progress 11 (3): 799-815. https://doi.org/10.1007/s11557-011-0793-7
  • Lawrence, D.P., Gannibal, P.B., Dugan, F.M. & Pryor, B.M. (2014) Characterization of Alternaria isolates from the infectoria species-group and a new taxon from Arrhenatherum, Pseudoalternaria arrhenatheria sp. nov. Mycological Progress 13: 257-276. https://doi.org/10.1007/s11557-013-0910-x
  • Lawrence, D.P., Gannibal, P.B., Peever, T.L. & Pryor, B.M. (2013) The sections of Alternaria: formalizing species-group concepts. Mycologia 105: 530-546 https://doi.org/10.3852/12-249
  • Lawrence, D.P., Rotondo, F. & Gannibal, P.B. (2016) Biodiversity and taxonomy of the pleomorphic genus Alternaria. Mycological Progress 15 (1): 1-22. https://doi.org/10.1007/s11557-015-1144-x
  • Liu, H.F., Liao, J., Chen, X.Y., Liu, Q.K., Yu, Z.H. & Deng, J.X. (2019) A novel species and a new record of Alternaria isolated from two Solanaceae plants in China. Mycological Progress 18: 1005-1012. https://doi.org/10.1007/s11557-019-01504-3
  • Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799-1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
  • Nylander, J.A.A. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
  • Pei, D.F., Aung, S.L.L., Liu, H.F., Liu, Q.K., Yu, Z.H. & Deng, J.X. (2019) Alternaria hydrangeae sp. nov. (Ascomycota: Pleosporaceae) from Hydrangea paniculata in China. Phytotaxa 401: 287-295. https://doi.org/10.11646/phytotaxa.401.4.6
  • Pinto, V.E.F. & Patriarca, A. (2017) Alternaria species and their associated mycotoxins. Mycotoxigenic Fungi Humana Press, New York, pp. 13-32. https://doi.org/10.1007/978-1-4939-6707-0_2
  • Pryor, B.M. & Bigelow, D.M. (2003) Molecular characterization of Embellisia and Nimbya species and their relationship to Alternaria, Ulocladium and Stemphylium. Mycologia 95: 1141-1154. https://doi.org/10.1080/15572536.2004.11833024
  • Pryor, B.M. & Gilbertson, R.L. (2000) Molecular phylogenetic relationships amongst Alternaria species and related fungi based upon analysis of nuclear ITS and mt SSU rDNA sequences. Mycological Research 104: 1312-1321. https://doi.org/10.1017/S0953756200003002
  • Rambaut, A. & Drummond, A. (2010) FigTree v.1.3.1. Institute of evolutionary biology, University of Edinburgh, Edinburgh, UK.
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572- 1574. https://doi.org/10.1093/bioinformatics/btg180
  • Simmons, E.G. (2007) Alternaria: An identification manual, CBS Biodiversity Series 6. Utrecht: Centraalbureau voor Schimmelcultures.
  • Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. https://doi.org/10.1093/bioinformatics/btl446
  • Shan, R.H. & She, M.L. (1979) Flora of China. Vol. 55 (1). Science Press, China.
  • Sung, G.H., Sung, J.M., Hywel-Jones, N.L. & Spatafora, J.W. (2007) A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): identification of localized incongruence using a combinational bootstrap approach. Molecular Phylogenetics and Evolution 44: 1204-1223. https://doi.org/10.1016/j.ympev.2007.03.011
  • Swofford, D.L. (2003) PAUP*: Phylogenetic analysis using parsimony, * and other methods. Version 4.0b10. Sinauer Associates, Sunderland.
  • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-39. https://doi.org/10.1093/molbev/msr121
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular biology and evolution 30: 2725-2729. https://doi.org/10.1093/molbev/mst197
  • Tao, Y.Q., Jia, G.G., Aung, S.L.L., Wu, Q.L., Lu, H.X. & Deng, J.X. (2019) Multigene phylogeny and morphology of Alternaria reveal a novel species and a new record in China. Phytotaxa 397: 169-176. https://doi.org/10.11646/phytotaxa.397.2.4
  • White, T.J., Bruns, T. & Lee, S. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. in: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, ifornia, USA, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  • Woudenberg, J.H., Groenewald, J.Z., Binder, M. & Crous, P.W. (2013) Alternaria redefined. Studies in Mycology 75: 171-212. https://doi.org/10.3114/sim0015
  • Woudenberg, J.H.C., Truter, M., Groenewald, J.Z. & Crous, P.W. (2014) Large-spored Alternaria pathogens in section Porri disentangled. Studies in Mycology 79: 1-47. https://doi.org/10.1016/j.simyco.2014.07.003
  • Woudenberg, J.H.C., Seidl, M.F., Groenewald, J.Z., Vries, M.D., Stielow, J.B., Thomma, B.P.H.J. & Crous, P.W. (2015) Alternaria section Alternaria: Species, f ormae speciales or pathotypes?. Studies in Mycology 82: 1-21. https://doi.org/10.1016/j.simyco.2015.07.001
  • Zhang, T.Y. (2003) Flora fungorum sinicorum, vol. 16 Alternaria. Beijing, China.
  • Zhang, W.M., Duan, Z.H., Sun, F. & Rao, G.X. (2004) The chemical constituents from the roots of Vicatia thibetica. Natural product research and development 16: 218-219. https://doi.org/10.16333/j.1001-6880.2004.03.010